Gm5095 (predicted gene 5095) - Rat Genome Database

Name: Gm5095
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm5095 (predicted gene 5095) Mus musculus

Analyze

Symbol:

Gm5095

Name:

predicted gene 5095

RGD ID:

2303949

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

328953; A730092B10

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	47,670,802 - 47,851,703 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	47,670,802 - 47,851,703 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	47,537,735 - 47,718,636 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	47,537,735 - 47,718,636 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	47,697,389 - 47,878,290 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	47,698,232 - 47,878,287 (+)	NCBI		MGSCv36	mm8
Celera	18	48,900,538 - 49,079,405 (+)	NCBI		Celera
Cytogenetic Map	18	C	NCBI
cM Map	18	25.23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:21267068

Genomics

Variants

Variants in Gm5095
6165 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
27226723	Tibw9_m	tibia width 9, proximal, 16 week (mouse)					18	3200000	60933072	Mouse
1558849	W3q15_m	weight 3 weeks QTL 15 (mouse)			Not determined		18	5041119	61272643	Mouse
1357603	Mom3_m	modifier of Min 3 (mouse)			Not determined		18	14030023	67098962	Mouse
1300994	Pvcan3_m	protection against vaginal candidiasis 3 (mouse)			Not determined		18	16199640	50199776	Mouse
1301307	Phospq1_m	phospholipid QTL 1 (mouse)			Not determined		18	18139704	52139859	Mouse
1300638	Im7_m	immunoregulatory 7 (mouse)			Not determined		18	19018874	53018992	Mouse
1558743	Kcal1_m	kilocalorie 1 (mouse)			Not determined		18	19018874	53018992	Mouse
11532709	Sluc41_m	susceptibility to lung cancer 41 (mouse)					18	20953694	57590708	Mouse
13463476	Hctq8_m	hematocrit QTL 8 (mouse)					18	21217580	55217727	Mouse
1300877	Adip8_m	adiposity 8 (mouse)			Not determined		18	22619914	56620127	Mouse
11532710	Sluc41a_m	susceptibility to lung cancer 41a (mouse)					18	22619914	56620127	Mouse
11532715	Sluc41b_m	susceptibility to lung cancer 41b (mouse)					18	22619914	56620127	Mouse
11532716	Sluc41c_m	susceptibility to lung cancer 41c (mouse)					18	22619914	56620127	Mouse
1301570	Sluc14_m	susceptibility to lung cancer 14 (mouse)			Not determined		18	22619914	56620127	Mouse
4142031	Moen1_m	modifier of engrailed QTL 1 (mouse)			Not determined		18	24115560	58115730	Mouse
25823173	Hrsq12_m	host response to SARS QTL 12, hemorrhage (mouse)					18	24895881	78339555	Mouse
12904950	Smmq3_m	soleus muscle mass QTL 3 (mouse)					18	26056875	60056875	Mouse
25823167	Hrsq5_m	host response to SARS QTL 5, D3% weight (mouse)					18	27241115	58827077	Mouse
25823171	Hrsq10_m	host response to SARS QTL 10, D4% weight (mouse)					18	27241115	58827077	Mouse
25823174	Hrsq11_m	host response to SARS QTL 11, log titer (mouse)					18	27241115	58827077	Mouse
1301400	Lmr13_m	leishmaniasis resistance 13 (mouse)			Not determined		18	28109380	62109518	Mouse
4141857	Mhysq5_m	male hybrid sterility QTL 5 (mouse)			Not determined			28130604	62130739	Mouse
1302163	Bmd16_m	bone mineral density 16 (mouse)			Not determined		18	29667914	63668060	Mouse
12880412	V125Dq12_m	vitamin D active form serum level QTL 12 (mouse)					18	30233067	64233067	Mouse
1300685	Scc5_m	colon tumor susceptibility 5 (mouse)			Not determined		18	31988480	65988629	Mouse
1357690	Vtbt19_m	vertebral trabecular bone trait 19 (mouse)			Not determined		18	33091043	67091221	Mouse
1301771	Pcyts6_m	plasmacytoma susceptibility 6 (mouse)			Not determined		18	35658632	69658851	Mouse
4142366	Chlq10_m	circulating hormone level QTL 10 (mouse)			Not determined		18	36291022	70291180	Mouse
15039381	Ltgq8_m	liver triglyceride QTL 8 (mouse)					18	38206569	72206569	Mouse
15039383	Mvlq5_m	microvesicular liver lesion QTL 5 (mouse)					18	38206569	72206569	Mouse
15039384	Liviq1_m	liver inflammation QTL 1 (mouse)					18	38206569	72206569	Mouse
15039386	Mvlq4_m	macrovesicular liver lesion QTL 4 (mouse)					18	38206569	72206569	Mouse
12050070	Nabq2_m	nasal bone morphology QTL 2 (mouse)					18	39103677	73103793	Mouse
1357639	Obsty4_m	obesity 4 (mouse)			Not determined		18	39619914	84638778	Mouse
1301902	Hrtfm4_m	heart failure modifier 4 (mouse)			Not determined		18	43311120	77311343	Mouse
1301215	Thcr_m	T helper cell response (mouse)			Not determined		18	45130604	68778777	Mouse
12904745	Carcdq2_m	cardiac collagen deposition QTL 2 (mouse)					18	46423287	80423287	Mouse
10412184	Sstapa1_m	Suseptibility to Staphylococus aureus infection 1 (mouse)			Not determined		18	46541546	57590708	Mouse
11039493	Ltpr8d_m	Leishmania tropica response 8d (mouse)					18	46874903	80875042	Mouse
11039494	Ltpr8b_m	Leishmania tropica response 8b (mouse)					18	46874903	80875042	Mouse

Markers in Region

12_5_2_1.seq

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	18	47,579,777 - 47,579,972	UniSTS	GRCm38
MGSCv37	18	47,739,431 - 47,739,626	UniSTS	GRCm37
Celera	18	48,942,626 - 48,942,821	UniSTS
Cytogenetic Map	18	C	UniSTS
Whitehead_YAC	18		UniSTS

12_5_2_2.seq

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	18	47,580,360 - 47,580,529	UniSTS	GRCm38
MGSCv37	18	47,740,014 - 47,740,183	UniSTS	GRCm37
Celera	18	48,943,209 - 48,943,378	UniSTS
Cytogenetic Map	18	C	UniSTS
Whitehead_YAC	18		UniSTS

20.MMHAP87FRG8.seq

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	18	47,685,597 - 47,685,748	UniSTS	GRCm38
MGSCv37	18	47,845,251 - 47,845,402	UniSTS	GRCm37
Celera	18	49,045,757 - 49,045,908	UniSTS
Cytogenetic Map	18	C	UniSTS
Whitehead_YAC	18		UniSTS

39.MMHAP53FLE6.seq

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	18	47,625,310 - 47,625,461	UniSTS	GRCm38
MGSCv37	18	47,784,964 - 47,785,115	UniSTS	GRCm37
Celera	18	48,988,271 - 48,988,422	UniSTS
Cytogenetic Map	18	C	UniSTS
Whitehead_YAC	18		UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_033454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC122211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC141639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK043399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000236621

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	47,670,802 - 47,851,703 (+)	Ensembl
GRCm38.p6 Ensembl	18	47,537,735 - 47,718,636 (+)	Ensembl

RefSeq Acc Id:

NR_033454

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	18	47,670,802 - 47,851,703 (+)	NCBI
GRCm38	18	47,537,735 - 47,718,636 (+)	ENTREZGENE
MGSCv37	18	47,697,389 - 47,878,290 (+)	RGD
Celera	18	48,900,538 - 49,079,405 (+)	RGD
cM Map	18		ENTREZGENE

Sequence:

show sequence

GTACTCAGAGCTAATGGCCCAGGAGGCAGCCTTCTCCCGATTTCCTTTACCTGGAGCAACATGG
AAGCTTGCTGTGTGCAGTCGCCCAGATGTCCTGATGGGACTGGGTCCCAGCGGCTCACACTGAA
AACCTGCCTATTAACACACCACGTTCTGGCTTCCTTCTCTTCTCACTCTCCTCTGACTCTCCTA
CTGCTGTTTCCTGGGATCGCTTTCCAACTCAACACTGCAGCTCAAAAGCCTTACTTATCTGCCA
GAATCAGACAAGCACAGAGATGTTGAAATTGCCAGGCAGAGTGCACCACCTGGGAAATCAGGAC
CAAAAGTTTATGTCCTGCTTTCTCCCGCTATGCAAAGTAAAAACAAACAACAGAAGCAAACCAA
GCAAATACCAACAACAATAAAATCTAGCAACATCTGTTATGCTGTCTACAGAGGACAGGTCCTA
ATTGTCTGAACTGGTCTGTGCAAATGGATTAGTTTTTACATGGCTGGCTTTAGAAGTGTTTCCA
GGGAAGGATTCCAGCCATCCATCTTTCCTACTGATTCTTCACTTGAAGTTTGTATAAGCTTTCT
GATTTTTTGACATCATACCTAACACATTGCCTGGGAATTGTGGGAAGGAGATCTTTGACTCCCA
GCTAGCTACCCAGAGGCTGGCTCAGACGAAGCACATCTAAGTTTGGTTGTGTAATTATTTTTTT
CCATGCTTGTACCAATACTCCGAGATGATACAGATTAAAGGGGGGAAAACAGAGCTTGAGAGTT
TTACAACTCCTGCAGGAGTTGGGATGCGGTTTTCTATCTGTCGCTTTGATTGGGAATTTAAATC
ATCTCGCATTGCAGGCAATTGGTTGCCTCCTAGGGTACAGAATCTGACAGTTTATAGCTCAATC
TGTGACTTGTTGACTTTAAAGGAAAAGTAGTAAAAATTAAAATGGAGAGAAACAGATAAATGTC
CCAGGCCTGGGCTCTGAGATGGAACATTGTATAATGATCACATCTGCTGTGAACCAGCACTGGA
AGGAAGGATGCTGGTGCCGCAGGACTGCTTACCCTGCAGGGGAGCTAGACAAGATTGGGTCAAG
TTTAACACACAAAACCAGCCAGCATGTCACAAGTGAAGCTGTTTGGACAAACATACTACTGGAC
GCATCTTGGGCTCAGCAACTTCAAAGGATGATCTGCAGCTCTGGTATTTGGCAAAGCAGAACAG
AGAAGCCTTTCTGCCTTCTGTTCTCAGACAGTCTGATCCAGCAAAGTGTACAAAAACTCACAAT
CTCAGAAGACGGTGACCTCAAGGCTTCAGGTGGGGGATTTGGCTTGTGAACTTCTTGAAGGGGG
ATAATCAGTTGTCAGCAATGAGGCAAAATTCAAAGAGATTTCTGTAGAGGTTTTTCATCACAGA
AACTGGGGCTGCCTATGAACCTGCTGCTACAAAGGCAGAAACCAGGCCGGCGTGTCAGACCAAG
ATGGATAAGACAGTCAGATTCTGTATCTCTGAACCCTTGGACTGACAGAGC

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000118259	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000236621	ENTREZGENE
MGD	MGI:3779458	ENTREZGENE
NCBI Gene	328953	ENTREZGENE
PhenoGen	Gm5095	PhenoGen
RNAcentral	URS000075B7E0	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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