C16orf90 (chromosome 16 open reading frame 90) - Rat Genome Database

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Gene: C16orf90 (chromosome 16 open reading frame 90) Homo sapiens
Analyze
Symbol: C16orf90
Name: chromosome 16 open reading frame 90
RGD ID: 2303333
HGNC Page HGNC:34455
Description: ASSOCIATED WITH epilepsy; Generalized-onset seizure; idiopathic generalized epilepsy; INTERACTS WITH aristolochic acid A; fulvestrant; tebuconazole
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC646174; uncharacterized protein C16orf90
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38163,493,484 - 3,496,652 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl163,493,484 - 3,495,489 (-)EnsemblGRCh38hg38GRCh38
GRCh37163,543,484 - 3,546,652 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36163,483,485 - 3,485,422 (-)NCBINCBI36Build 36hg18NCBI36
Celera163,750,264 - 3,752,201 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef163,513,143 - 3,515,080 (-)NCBIHuRef
CHM1_1163,543,566 - 3,545,503 (-)NCBICHM1_1
T2T-CHM13v2.0163,520,742 - 3,523,910 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:29676528   PMID:30232004  


Genomics

Comparative Map Data
C16orf90
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38163,493,484 - 3,496,652 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl163,493,484 - 3,495,489 (-)EnsemblGRCh38hg38GRCh38
GRCh37163,543,484 - 3,546,652 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36163,483,485 - 3,485,422 (-)NCBINCBI36Build 36hg18NCBI36
Celera163,750,264 - 3,752,201 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef163,513,143 - 3,515,080 (-)NCBIHuRef
CHM1_1163,543,566 - 3,545,503 (-)NCBICHM1_1
T2T-CHM13v2.0163,520,742 - 3,523,910 (-)NCBIT2T-CHM13v2.0
1700037C18Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39163,723,662 - 3,726,553 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl163,713,043 - 3,726,553 (-)EnsemblGRCm39 Ensembl
GRCm38163,905,798 - 3,908,689 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl163,895,179 - 3,908,689 (-)EnsemblGRCm38mm10GRCm38
MGSCv37163,905,798 - 3,908,689 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36163,821,029 - 3,823,888 (-)NCBIMGSCv36mm8
Celera164,536,289 - 4,539,182 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map162.29NCBI
C10h16orf90
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81012,125,235 - 12,138,441 (+)NCBIGRCr8
mRatBN7.21011,618,867 - 11,632,151 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1011,618,348 - 11,629,910 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01011,878,043 - 11,880,822 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1011,877,903 - 11,891,099 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01010,634,202 - 10,647,406 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41011,886,572 - 11,889,287 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1010,575,576 - 10,578,355 (+)NCBICelera
Cytogenetic Map10q12NCBI
CUNH16orf90
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544213,890,284 - 13,892,362 (+)NCBIChiLan1.0ChiLan1.0
C18H16orf90
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2184,014,354 - 4,023,755 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1167,797,982 - 7,807,326 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0162,415,638 - 2,419,093 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1163,592,843 - 3,596,010 (-)NCBIpanpan1.1PanPan1.1panPan2
C6H16orf90
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1637,754,210 - 37,756,174 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl637,754,234 - 37,756,173 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,082,535 - 39,084,131 (+)NCBIDog10K_Boxer_Tasha
CUNH16orf90
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,894,071 - 105,898,785 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936694810,306 - 815,052 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936694810,164 - 815,392 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C3H16orf90
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1338,753,455 - 38,761,881 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2340,121,596 - 40,123,163 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH16orf90
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.153,190,148 - 3,192,091 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606827,628,417 - 27,630,359 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH16orf90
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248241,289,352 - 1,295,555 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C16orf90
1 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 16p13.3(chr16:2717952-4041020)x3 copy number gain See cases [RCV000052395] Chr16:2717952..4041020 [GRCh38]
Chr16:2767953..4091021 [GRCh37]
Chr16:2707954..4031022 [NCBI36]
Chr16:16p13.3		 pathogenic
GRCh38/hg38 16p13.3(chr16:3493167-3993345)x3 copy number gain See cases [RCV000052396] Chr16:3493167..3993345 [GRCh38]
Chr16:3543167..4043346 [GRCh37]
Chr16:3483168..3983347 [NCBI36]
Chr16:16p13.3		 pathogenic
GRCh38/hg38 16p13.3-13.13(chr16:23141-11296695)x3 copy number gain See cases [RCV000052367] Chr16:23141..11296695 [GRCh38]
Chr16:73141..11390552 [GRCh37]
Chr16:13141..11298053 [NCBI36]
Chr16:16p13.3-13.13		 pathogenic
GRCh38/hg38 16p13.3(chr16:2850734-7110697)x1 copy number loss See cases [RCV000053270] Chr16:2850734..7110697 [GRCh38]
Chr16:2900735..7160698 [GRCh37]
Chr16:2840736..7100699 [NCBI36]
Chr16:16p13.3		 pathogenic
GRCh38/hg38 16p13.3-13.13(chr16:46766-11525516)x3 copy number gain See cases [RCV000133780] Chr16:46766..11525516 [GRCh38]
Chr16:96766..11619372 [GRCh37]
Chr16:36766..11526873 [NCBI36]
Chr16:16p13.3-13.13		 pathogenic
GRCh38/hg38 16p13.3(chr16:46766-4247185)x3 copy number gain See cases [RCV000136687] Chr16:46766..4247185 [GRCh38]
Chr16:96766..4297186 [GRCh37]
Chr16:36766..4237187 [NCBI36]
Chr16:16p13.3		 pathogenic
GRCh38/hg38 16p13.3(chr16:3303551-3965374)x3 copy number gain See cases [RCV000138346] Chr16:3303551..3965374 [GRCh38]
Chr16:3353551..4015375 [GRCh37]
Chr16:3293552..3955376 [NCBI36]
Chr16:16p13.3		 likely pathogenic
GRCh38/hg38 16p13.3-13.12(chr16:43732-13326806)x3 copy number gain See cases [RCV000139166] Chr16:43732..13326806 [GRCh38]
Chr16:93732..13420663 [GRCh37]
Chr16:33732..13328164 [NCBI36]
Chr16:16p13.3-13.12		 pathogenic
GRCh38/hg38 16p13.3(chr16:3061267-3666094)x3 copy number gain See cases [RCV000139806] Chr16:3061267..3666094 [GRCh38]
Chr16:3111268..3716095 [GRCh37]
Chr16:3051269..3656096 [NCBI36]
Chr16:16p13.3		 uncertain significance
GRCh38/hg38 16p13.3-13.11(chr16:666662-15743104)x3 copy number gain See cases [RCV000143710] Chr16:666662..15743104 [GRCh38]
Chr16:716662..15836961 [GRCh37]
Chr16:656663..15744462 [NCBI36]
Chr16:16p13.3-13.11		 pathogenic
GRCh37/hg19 16p13.3-11.2(chr16:102839-28327676)x3 copy number gain See cases [RCV000203445] Chr16:102839..28327676 [GRCh37]
Chr16:16p13.3-11.2		 pathogenic
GRCh37/hg19 16p13.3-11.2(chr16:1279324-31926800)x3 copy number gain Breast ductal adenocarcinoma [RCV000207053] Chr16:1279324..31926800 [GRCh37]
Chr16:16p13.3-11.2		 uncertain significance
GRCh37/hg19 16p13.3-12.3(chr16:1274615-19073133)x3 copy number gain Breast ductal adenocarcinoma [RCV000207326] Chr16:1274615..19073133 [GRCh37]
Chr16:16p13.3-12.3		 uncertain significance
GRCh37/hg19 16p13.3(chr16:3104050-3722491)x3 copy number gain See cases [RCV000240036] Chr16:3104050..3722491 [GRCh37]
Chr16:16p13.3		 uncertain significance
GRCh37/hg19 16p13.3(chr16:2867891-3942436)x3 copy number gain See cases [RCV000240318] Chr16:2867891..3942436 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:69193-90274381)x3 copy number gain See cases [RCV000446684] Chr16:69193..90274381 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-13.2(chr16:78801-9169448) copy number gain See cases [RCV000446555] Chr16:78801..9169448 [GRCh37]
Chr16:16p13.3-13.2		 pathogenic
GRCh37/hg19 16p13.3(chr16:97133-5122974)x3 copy number gain See cases [RCV000445663] Chr16:97133..5122974 [GRCh37]
Chr16:16p13.3		 pathogenic
maternal UPD(16p) complex Hemimegalencephaly [RCV000494707] Chr16:1280042..33710558 [GRCh37]
Chr16:16p13.3-11.2		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062) copy number gain See cases [RCV000511296] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062)x3 copy number gain See cases [RCV000512138] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:3146027-6362229)x1 copy number loss See cases [RCV000511703] Chr16:3146027..6362229 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3-13.2(chr16:85880-9883129)x3 copy number gain See cases [RCV000510698] Chr16:85880..9883129 [GRCh37]
Chr16:16p13.3-13.2		 pathogenic
GRCh37/hg19 16p13.3-12.2(chr16:85880-22442007)x3 copy number gain See cases [RCV000511360] Chr16:85880..22442007 [GRCh37]
Chr16:16p13.3-12.2		 pathogenic
GRCh37/hg19 16p13.3(chr16:2891391-4440397)x3 copy number gain See cases [RCV000511502] Chr16:2891391..4440397 [GRCh37]
Chr16:16p13.3		 uncertain significance
GRCh37/hg19 16p13.3-12.3(chr16:85880-19806921)x3 copy number gain See cases [RCV000512194] Chr16:85880..19806921 [GRCh37]
Chr16:16p13.3-12.3		 pathogenic
GRCh37/hg19 16p13.3-13.13(chr16:85880-11209288)x3 copy number gain not provided [RCV000683743] Chr16:85880..11209288 [GRCh37]
Chr16:16p13.3-13.13		 pathogenic
GRCh37/hg19 16p13.3(chr16:1505184-4415346)x3 copy number gain not provided [RCV000683745] Chr16:1505184..4415346 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:2651354-4460114)x3 copy number gain not provided [RCV000683747] Chr16:2651354..4460114 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:3265427-3731182)x3 copy number gain not provided [RCV000683748] Chr16:3265427..3731182 [GRCh37]
Chr16:16p13.3		 uncertain significance
GRCh37/hg19 16p13.3(chr16:3519135-3651271)x1 copy number loss not provided [RCV000683749] Chr16:3519135..3651271 [GRCh37]
Chr16:16p13.3		 uncertain significance
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90274695)x3 copy number gain not provided [RCV000738918] Chr16:88165..90274695 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:61451-90294632)x3 copy number gain not provided [RCV000738915] Chr16:61451..90294632 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90163275)x3 copy number gain not provided [RCV000738917] Chr16:88165..90163275 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:109978-4316797) copy number gain Chromosome 16p13.3 duplication syndrome [RCV000767731] Chr16:109978..4316797 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:3112024-3738078)x3 copy number gain not provided [RCV000849936] Chr16:3112024..3738078 [GRCh37]
Chr16:16p13.3		 uncertain significance
GRCh37/hg19 16p13.3(chr16:3469027-4328143)x3 copy number gain not provided [RCV000849459] Chr16:3469027..4328143 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:2651354-4614965)x3 copy number gain not provided [RCV001006745] Chr16:2651354..4614965 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:84485-5251013)x3 copy number gain not provided [RCV001537890] Chr16:84485..5251013 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:85880-5249457)x3 copy number gain not provided [RCV001259749] Chr16:85880..5249457 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3-11.2(chr16:2959279-30190593)x3 copy number gain See cases [RCV001263169] Chr16:2959279..30190593 [GRCh37]
Chr16:16p13.3-11.2		 pathogenic|likely pathogenic
NC_000016.9:g.(?_3543839)_(3551089_?)dup duplication not provided [RCV001316315] Chr16:3543839..3551089 [GRCh37]
Chr16:16p13.3		 uncertain significance
NC_000016.9:g.(?_3293141)_(3929917_?)del deletion Rubinstein-Taybi syndrome [RCV001950905] Chr16:3293141..3929917 [GRCh37]
Chr16:16p13.3		 pathogenic
NC_000016.9:g.(?_256302)_(5971108_?)dup duplication Familial Mediterranean fever [RCV001877532]|Fanconi anemia [RCV001877533]|not provided [RCV001877531] Chr16:256302..5971108 [GRCh37]
Chr16:16p13.3		 uncertain significance
NC_000016.9:g.(?_256302)_(4852572_?)dup duplication Epilepsy [RCV003113403]|Idiopathic generalized epilepsy [RCV003109446]|Saldino-Mainzer syndrome [RCV003113404] Chr16:256302..4852572 [GRCh37]
Chr16:16p13.3		 uncertain significance
NC_000016.9:g.(?_3293141)_(5971108_?)dup duplication Rubinstein-Taybi syndrome [RCV003113465] Chr16:3293141..5971108 [GRCh37]
Chr16:16p13.3		 uncertain significance
GRCh37/hg19 16p13.3(chr16:111043-6627459)x3 copy number gain See cases [RCV002292215] Chr16:111043..6627459 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:2606711-3935836)x3 copy number gain not provided [RCV003485082] Chr16:2606711..3935836 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:2643569-3716657)x3 copy number gain not provided [RCV003485084] Chr16:2643569..3716657 [GRCh37]
Chr16:16p13.3		 uncertain significance
GRCh37/hg19 16p13.3(chr16:2990033-4837646)x1 copy number loss not provided [RCV003885471] Chr16:2990033..4837646 [GRCh37]
Chr16:16p13.3		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:810
Count of miRNA genes:318
Interacting mature miRNAs:355
Transcripts:ENST00000399645, ENST00000437192
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH41812  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37163,543,090 - 3,543,198UniSTSGRCh37
Build 36163,483,091 - 3,483,199RGDNCBI36
Celera163,749,870 - 3,749,978RGD
Cytogenetic Map16p13.3UniSTS
HuRef163,512,749 - 3,512,857UniSTS
GeneMap99-GB4 RH Map1664.46UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 1 358
Low 12 6 31 5 13 4 27 8 43 3 52 21 1 5 15
Below cutoff 1151 1488 783 205 822 120 2065 1054 2198 189 545 771 89 580 1348 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000399645   ⟹   ENSP00000382553
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl163,493,484 - 3,495,480 (-)Ensembl
RefSeq Acc Id: ENST00000437192   ⟹   ENSP00000401335
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl163,493,484 - 3,495,489 (-)Ensembl
RefSeq Acc Id: NM_001080524   ⟹   NP_001073993
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38163,493,484 - 3,495,489 (-)NCBI
GRCh37163,543,484 - 3,545,758 (-)NCBI
Build 36163,483,485 - 3,485,422 (-)NCBI Archive
Celera163,750,264 - 3,752,201 (-)RGD
HuRef163,513,143 - 3,515,080 (-)RGD
CHM1_1163,543,566 - 3,545,503 (-)NCBI
T2T-CHM13v2.0163,520,742 - 3,522,747 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001353382   ⟹   NP_001340311
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38163,493,484 - 3,496,652 (-)NCBI
T2T-CHM13v2.0163,520,742 - 3,523,910 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001353383   ⟹   NP_001340312
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38163,493,484 - 3,496,652 (-)NCBI
T2T-CHM13v2.0163,520,742 - 3,523,910 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001353384   ⟹   NP_001340313
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38163,493,484 - 3,496,652 (-)NCBI
T2T-CHM13v2.0163,520,742 - 3,523,910 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001353385   ⟹   NP_001340314
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38163,493,484 - 3,495,489 (-)NCBI
T2T-CHM13v2.0163,520,742 - 3,522,747 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024450393   ⟹   XP_024306161
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38163,493,484 - 3,496,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054313690   ⟹   XP_054169665
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0163,520,742 - 3,523,620 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001073993   ⟸   NM_001080524
- Peptide Label: isoform a
- UniProtKB: A8MZG2 (UniProtKB/Swiss-Prot),   H0Y3R3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001340313   ⟸   NM_001353384
- Peptide Label: isoform c
- Sequence:
RefSeq Acc Id: NP_001340312   ⟸   NM_001353383
- Peptide Label: isoform c
- Sequence:
RefSeq Acc Id: NP_001340311   ⟸   NM_001353382
- Peptide Label: isoform b
- UniProtKB: H0Y3R3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024306161   ⟸   XM_024450393
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001340314   ⟸   NM_001353385
- Peptide Label: isoform c
- Sequence:
RefSeq Acc Id: ENSP00000382553   ⟸   ENST00000399645
RefSeq Acc Id: ENSP00000401335   ⟸   ENST00000437192
RefSeq Acc Id: XP_054169665   ⟸   XM_054313690
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A8MZG2-F1-model_v2 AlphaFold A8MZG2 1-182 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:34455 AgrOrtholog
COSMIC C16orf90 COSMIC
Ensembl Genes ENSG00000215131 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000399645.3 UniProtKB/TrEMBL
  ENST00000437192 ENTREZGENE
  ENST00000437192.8 UniProtKB/Swiss-Prot
GTEx ENSG00000215131 GTEx
HGNC ID HGNC:34455 ENTREZGENE
Human Proteome Map C16orf90 Human Proteome Map
InterPro DUF4644 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:646174 UniProtKB/Swiss-Prot
NCBI Gene 646174 ENTREZGENE
PANTHER PTHR37334 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RGD1561796 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4644 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA162378507 PharmGKB
UniProt A8MZG2 ENTREZGENE, UniProtKB/Swiss-Prot
  H0Y3R3 ENTREZGENE, UniProtKB/TrEMBL