Snora34 (small nucleolar RNA, H/ACA box 34) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Snora34 (small nucleolar RNA, H/ACA box 34) Mus musculus
Analyze
Symbol: Snora34
Name: small nucleolar RNA, H/ACA box 34
RGD ID: 2302633
MGI Page MGI
Description: INTERACTS WITH tetrachloromethane; bisphenol A (ortholog); cisplatin (ortholog)
Type: snorna
RefSeq Status: PROVISIONAL
Previously known as: MBI-8; MBI-89
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,417,598 - 98,417,715 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1598,417,597 - 98,417,734 (-)EnsemblGRCm39 Ensembl
GRCm381598,519,717 - 98,519,834 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,519,716 - 98,519,853 (-)EnsemblGRCm38mm10GRCm38
Celera15100,667,262 - 100,667,379 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1554.52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:11387227   PMID:11424213  


Genomics

Comparative Map Data
Snora34
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,417,598 - 98,417,715 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1598,417,597 - 98,417,734 (-)EnsemblGRCm39 Ensembl
GRCm381598,519,717 - 98,519,834 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,519,716 - 98,519,853 (-)EnsemblGRCm38mm10GRCm38
Celera15100,667,262 - 100,667,379 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1554.52NCBI
SNORA2C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,654,382 - 48,654,518 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1248,654,382 - 48,654,518 (-)EnsemblGRCh38hg38GRCh38
GRCh371249,048,165 - 49,048,301 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361247,334,432 - 47,334,568 (-)NCBINCBI36Build 36hg18NCBI36
Celera1247,844,149 - 47,844,285 (-)NCBICelera
Cytogenetic Map12q13.11NCBI
HuRef1246,082,222 - 46,082,358 (-)NCBIHuRef
CHM1_11249,013,948 - 49,014,084 (-)NCBICHM1_1
T2T-CHM13v2.01248,616,405 - 48,616,541 (-)NCBIT2T-CHM13v2.0
Snora34
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87131,548,985 - 131,549,120 (-)NCBIGRCr8
mRatBN7.27129,669,954 - 129,670,089 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7129,669,954 - 129,670,089 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map7q36NCBI
LOC119866496
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2740,413,977 - 40,414,112 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0275,895,227 - 5,895,362 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl275,895,227 - 5,895,362 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1275,858,456 - 5,858,591 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0275,849,256 - 5,849,391 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02740,805,707 - 40,805,842 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:103
Interacting mature miRNAs:107
Transcripts:ENSMUST00000083402
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
11528547Sluc34_msusceptibility to lung cancer 34 (mouse)1597884933102896555Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585901546104073951Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585896437104073951Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585896437104073951Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
14700689Carg5_mCandida albicans resistance gene 5 (mouse)1597697881103008427Mouse
4141581Dshv1_mdorsal hippocampal volume 1 (mouse)Not determined92788640103425899Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82615474104073951Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585896437104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000083402
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1598,519,716 - 98,519,853 (-)Ensembl
Ensembl Acc Id: ENSMUST00020182350
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1598,417,597 - 98,417,734 (-)Ensembl
RefSeq Acc Id: NR_034051
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391598,417,598 - 98,417,715 (-)NCBI
GRCm381598,519,717 - 98,519,834 (-)ENTREZGENE
Celera15100,667,262 - 100,667,379 (-)ENTREZGENE
cM Map15 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065336 Ensembl
  ENSMUSG00002076288 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00020182350 ENTREZGENE
MGD MGI:3819502 ENTREZGENE
NCBI Gene 100217417 ENTREZGENE
PhenoGen Snora34 PhenoGen
RNAcentral URS000050263B RNACentral