Snora41 (small nucleolar RNA, H/ACA box 41) - Rat Genome Database

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Gene: Snora41 (small nucleolar RNA, H/ACA box 41) Mus musculus
Analyze
Symbol: Snora41
Name: small nucleolar RNA, H/ACA box 41
RGD ID: 2302596
MGI Page MGI
Description: INTERACTS WITH 1,4-dichlorobenzene; pregnenolone 16alpha-carbonitrile; silver atom
Type: snorna
RefSeq Status: PROVISIONAL
Previously known as: MBI-8; MBI-83
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39163,218,182 - 63,218,294 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl163,218,163 - 63,218,294 (+)EnsemblGRCm39 Ensembl
GRCm38163,179,023 - 63,179,135 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl163,179,004 - 63,179,135 (+)EnsemblGRCm38mm10GRCm38
MGSCv37163,225,597 - 63,225,709 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera163,689,413 - 63,689,525 (+)NCBICelera
Cytogenetic Map1C2NCBI
cM Map132.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11387227   PMID:11424213  


Genomics

Comparative Map Data
Snora41
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39163,218,182 - 63,218,294 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl163,218,163 - 63,218,294 (+)EnsemblGRCm39 Ensembl
GRCm38163,179,023 - 63,179,135 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl163,179,004 - 63,179,135 (+)EnsemblGRCm38mm10GRCm38
MGSCv37163,225,597 - 63,225,709 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera163,689,413 - 63,689,525 (+)NCBICelera
Cytogenetic Map1C2NCBI
cM Map132.31NCBI
SNORA41
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382206,162,228 - 206,162,359 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2206,162,228 - 206,162,359 (+)EnsemblGRCh38hg38GRCh38
GRCh372207,026,952 - 207,027,083 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362206,735,197 - 206,735,328 (+)NCBINCBI36Build 36hg18NCBI36
Celera2200,784,382 - 200,784,513 (+)NCBICelera
Cytogenetic Map2q33.3NCBI
HuRef2198,875,534 - 198,875,665 (+)NCBIHuRef
CHM1_12207,033,511 - 207,033,642 (+)NCBICHM1_1
T2T-CHM13v2.02206,644,122 - 206,644,253 (+)NCBIT2T-CHM13v2.0
Snora41
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8972,075,924 - 72,076,055 (+)NCBIGRCr8
mRatBN7.2964,582,070 - 64,582,201 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl964,582,070 - 64,582,201 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl969,955,501 - 69,955,632 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map9q32NCBI
LOC119867995
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3715,592,931 - 15,593,063 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03714,651,550 - 14,651,682 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13714,605,791 - 14,605,923 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03714,578,057 - 14,578,189 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03714,574,353 - 14,574,485 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Snora41
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:52
Interacting mature miRNAs:55
Transcripts:ENSMUST00000082668
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14541777372975057Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4142307Shali1_msurvival time to hyperoxic acute lung injury 1 (mouse)Not determined5196402570406589Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse

Markers in Region
G19935  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38163,177,272 - 63,177,858UniSTSGRCm38
MGSCv37163,223,846 - 63,224,432UniSTSGRCm37
Celera163,687,662 - 63,688,248UniSTS
Cytogenetic Map1C2UniSTS
RH66863  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38163,177,272 - 63,177,858UniSTSGRCm38
MGSCv37163,223,846 - 63,224,432UniSTSGRCm37
Celera163,687,662 - 63,688,248UniSTS
Cytogenetic Map1C2UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000082668
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl163,218,163 - 63,218,294 (+)Ensembl
GRCm38.p6 Ensembl163,179,004 - 63,179,135 (+)Ensembl
RefSeq Acc Id: NR_028558
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39163,218,182 - 63,218,294 (+)NCBI
GRCm38163,179,023 - 63,179,135 (+)ENTREZGENE
MGSCv37163,225,597 - 63,225,709 (+)RGD
Celera163,689,413 - 63,689,525 (+)RGD
cM Map1 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064602 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082668 ENTREZGENE
MGD MGI:3819505 ENTREZGENE
NCBI Gene 100217464 ENTREZGENE
PhenoGen Snora41 PhenoGen
RNAcentral URS00003A3A32 RNACentral