Snord95 (small nucleolar RNA, C/D box 95) - Rat Genome Database

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Gene: Snord95 (small nucleolar RNA, C/D box 95) Mus musculus
Analyze
Symbol: Snord95
Name: small nucleolar RNA, C/D box 95
RGD ID: 2302516
MGI Page MGI
Description: Is expressed in head.
Type: snorna
RefSeq Status: PROVISIONAL
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391148,693,966 - 48,694,033 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1148,693,966 - 48,694,033 (+)EnsemblGRCm39 Ensembl
GRCm381148,803,139 - 48,803,206 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1148,803,139 - 48,803,206 (+)EnsemblGRCm38mm10GRCm38
MGSCv371148,616,641 - 48,616,708 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1153,385,378 - 53,385,445 (+)NCBICelera
Cytogenetic Map11B1.2NCBI
cM Map1128.77NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23212600  


Genomics

Comparative Map Data
Snord95
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391148,693,966 - 48,694,033 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1148,693,966 - 48,694,033 (+)EnsemblGRCm39 Ensembl
GRCm381148,803,139 - 48,803,206 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1148,803,139 - 48,803,206 (+)EnsemblGRCm38mm10GRCm38
MGSCv371148,616,641 - 48,616,708 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1153,385,378 - 53,385,445 (+)NCBICelera
Cytogenetic Map11B1.2NCBI
cM Map1128.77NCBI
SNORD95
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385181,243,314 - 181,243,376 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5181,243,312 - 181,243,379 (-)EnsemblGRCh38hg38GRCh38
GRCh375180,670,314 - 180,670,376 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365180,602,920 - 180,602,982 (-)NCBINCBI36Build 36hg18NCBI36
Celera5176,298,167 - 176,298,229 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5175,397,256 - 175,397,318 (-)NCBIHuRef
CHM1_15180,102,718 - 180,102,780 (-)NCBICHM1_1
T2T-CHM13v2.05181,803,266 - 181,803,328 (-)NCBIT2T-CHM13v2.0
Snord95
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81033,673,118 - 33,673,185 (+)NCBIGRCr8
mRatBN7.21033,171,983 - 33,172,050 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1033,171,983 - 33,172,050 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1034,152,285 - 34,152,352 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map10q21NCBI
LOC119874083
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha11489,179 - 489,246 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.011392,684 - 392,751 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.111364,851 - 364,918 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.011452,434 - 452,501 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.011613,851 - 613,918 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Snord95
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:148
Count of miRNA genes:143
Interacting mature miRNAs:148
Transcripts:ENSMUST00000082846
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
13452402Hipmt3_mhippocampal morphometry trait 3 (mouse)114797732550277325Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000082846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,693,966 - 48,694,033 (+)Ensembl
GRCm38.p6 Ensembl1148,803,139 - 48,803,206 (+)Ensembl
RefSeq Acc Id: NR_028564
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391148,693,966 - 48,694,033 (+)NCBI
GRCm381148,803,139 - 48,803,206 (+)ENTREZGENE
MGSCv371148,616,641 - 48,616,708 (+)RGD
Celera1153,385,378 - 53,385,445 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Promoters
RGD ID:8674430
Promoter ID:EPDNEW_M15245
Type:single initiation site
Name:Snord96a_1
Description:Mus musculus small nucleolar RNA, C/D box 96A , small nucleolarRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381148,802,036 - 48,802,096EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064780 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082846 ENTREZGENE
MGD MGI:3819567 ENTREZGENE
NCBI Gene 100216540 ENTREZGENE
PhenoGen Snord95 PhenoGen
RNAcentral URS000015031E RNACentral