Snord118 (small nucleolar RNA, C/D box 118) - Rat Genome Database

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Gene: Snord118 (small nucleolar RNA, C/D box 118) Mus musculus
Analyze
Symbol: Snord118
Name: small nucleolar RNA, C/D box 118
RGD ID: 2302470
MGI Page MGI
Description: ASSOCIATED WITH Diamond-Blackfan anemia (ortholog); dyskeratosis congenita (ortholog); Gitelman syndrome (ortholog); INTERACTS WITH dextran sulfate; dibenzofurans; tetrachloromethane
Type: snorna
RefSeq Status: VALIDATED
Previously known as: MBI-3; MBI-34
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,964,252 - 68,964,388 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1168,964,253 - 68,964,387 (+)EnsemblGRCm39 Ensembl
GRCm381169,073,426 - 69,073,562 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,073,427 - 69,073,561 (+)EnsemblGRCm38mm10GRCm38
MGSCv371168,886,928 - 68,887,064 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1176,017,094 - 76,017,230 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:6202321   PMID:11387227  


Genomics

Comparative Map Data
Snord118
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,964,252 - 68,964,388 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1168,964,253 - 68,964,387 (+)EnsemblGRCm39 Ensembl
GRCm381169,073,426 - 69,073,562 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,073,427 - 69,073,561 (+)EnsemblGRCm38mm10GRCm38
MGSCv371168,886,928 - 68,887,064 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1176,017,094 - 76,017,230 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.35NCBI
SNORD118
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38178,173,452 - 8,173,588 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl178,173,454 - 8,173,587 (-)EnsemblGRCh38hg38GRCh38
GRCh37178,076,770 - 8,076,906 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera178,105,024 - 8,105,159 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,972,674 - 7,972,809 (-)NCBIHuRef
CHM1_1178,085,596 - 8,085,731 (-)NCBICHM1_1
T2T-CHM13v2.0178,079,612 - 8,079,748 (-)NCBIT2T-CHM13v2.0
Snord118
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,273,655 - 54,273,790 (+)NCBIGRCr8
mRatBN7.21053,774,811 - 53,774,946 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1053,774,811 - 53,774,946 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1055,656,405 - 55,656,540 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map10q24NCBI
LOC119872052
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha533,126,595 - 33,126,730 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0533,093,454 - 33,093,589 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl533,093,454 - 33,093,589 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1533,060,263 - 33,060,398 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0533,016,045 - 33,016,180 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0533,196,000 - 33,196,135 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Snord118
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:58
Count of miRNA genes:58
Interacting mature miRNAs:58
Transcripts:ENSMUST00000082965
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000082965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,964,253 - 68,964,387 (+)Ensembl
GRCm38.p6 Ensembl1169,073,427 - 69,073,561 (+)Ensembl
RefSeq Acc Id: NR_028566
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,964,252 - 68,964,388 (+)NCBI
GRCm381169,073,426 - 69,073,562 (+)ENTREZGENE
MGSCv371168,886,928 - 68,887,064 (+)RGD
Celera1176,017,094 - 76,017,230 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Promoters
RGD ID:8675142
Promoter ID:EPDNEW_M15602
Type:single initiation site
Name:Snord118_1
Description:Mus musculus small nucleolar RNA, C/D box 118 , small nucleolarRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,073,426 - 69,073,486EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064899 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082965 ENTREZGENE
MGD MGI:3819519 ENTREZGENE
NCBI Gene 100216530 ENTREZGENE
PhenoGen Snord118 PhenoGen
RNAcentral URS0000E60A7D RNACentral