Gm15107 (predicted gene 15107) - Rat Genome Database

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Gene: Gm15107 (predicted gene 15107) Mus musculus
Analyze
Symbol: Gm15107
Name: predicted gene 15107
RGD ID: 2302162
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC434864; MGC129142; Ott-like; ovary testis transcribed; ovary testis transcribed-like; uncharacterized protein LOC434864
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X146,963,671 - 147,007,706 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX146,963,720 - 147,007,706 (+)EnsemblGRCm39 Ensembl
GRCm38X148,180,675 - 148,224,710 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX148,180,724 - 148,224,710 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X144,615,267 - 144,659,253 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X143,427,092 - 143,471,078 (+)NCBIMGSCv36mm8
Cytogenetic MapXF2NCBI
cM MapX68.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:8842733   PMID:12477932  


Genomics

Variants

.
Variants in Gm15107
1161 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:126
Count of miRNA genes:118
Interacting mature miRNAs:122
Transcripts:ENSMUST00000112796
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
1301276Tswt_mtestis weight (mouse)Not determinedX138376411150789338Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse

Markers in Region
Ott  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXF3UniSTS
Cytogenetic MapXF2UniSTS
cM MapX62.5UniSTS
mOtt  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXF3UniSTS
Cytogenetic MapXF2UniSTS
Ott  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXF3UniSTS
Cytogenetic MapXF2UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000112796   ⟹   ENSMUSP00000108416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX146,963,720 - 147,007,706 (+)Ensembl
GRCm38.p6 EnsemblX148,180,724 - 148,224,710 (+)Ensembl
RefSeq Acc Id: NM_001081648   ⟹   NP_001075117
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X146,963,720 - 147,007,706 (+)NCBI
GRCm38X148,180,724 - 148,224,710 (+)NCBI
MGSCv37X144,615,267 - 144,659,253 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XR_878261
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X146,963,671 - 147,007,106 (+)NCBI
GRCm38X148,180,675 - 148,224,110 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001075117 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI09132 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000108416
  ENSMUSP00000108416.2
Reference Protein Sequences
RefSeq Acc Id: NP_001075117   ⟸   NM_001081648
- UniProtKB: B1B0X0 (UniProtKB/TrEMBL),   Q32MH2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000108416   ⟸   ENSMUST00000112796

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1B0X0-F1-model_v2 AlphaFold B1B0X0 1-449 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000072930 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000112796 ENTREZGENE
  ENSMUST00000112796.2 UniProtKB/TrEMBL
KEGG Report mmu:434864 UniProtKB/TrEMBL
MGD MGI:3713328 ENTREZGENE
NCBI Gene 434864 ENTREZGENE
PANTHER LEUCINE ZIPPER PROTEIN 4-RELATED UniProtKB/TrEMBL
  LEUCINE ZIPPER PROTEIN 4-RELATED UniProtKB/TrEMBL
PhenoGen Gm15107 PhenoGen
UniProt B1B0X0 ENTREZGENE, UniProtKB/TrEMBL
  Q32MH2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm15107  predicted gene 15107  OTTMUSG00000019001  predicted gene, OTTMUSG00000019001  Symbol and/or name change 5135510 APPROVED