SNAR-A10 (small NF90 (ILF3) associated RNA A10) - Rat Genome Database

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Gene: SNAR-A10 (small NF90 (ILF3) associated RNA A10) Homo sapiens
Analyze
Symbol: SNAR-A10
Name: small NF90 (ILF3) associated RNA A10
RGD ID: 2301580
HGNC Page HGNC:34313
Description: Predicted to be located in cytoplasm and nucleus.
Type: snrna
RefSeq Status: PROVISIONAL
Previously known as: small ILF3/NF90-associated RNA A10
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381950,123,074 - 50,123,194 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371950,626,331 - 50,626,451 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19q13.33NCBI
HuRef1946,979,056 - 46,979,176 (-)NCBIHuRef
CHM1_11950,597,911 - 50,598,031 (-)NCBICHM1_1
T2T-CHM13v2.01953,140,783 - 53,140,903 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:17855395  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 19q13.33-13.43(chr19:49907832-58557889)x3 copy number gain See cases [RCV000052925] Chr19:49907832..58557889 [GRCh38]
Chr19:50411089..59069256 [GRCh37]
Chr19:55102901..63761068 [NCBI36]
Chr19:19q13.33-13.43		 pathogenic
GRCh38/hg38 19q13.33(chr19:50076580-50354608)x3 copy number gain See cases [RCV000052591] Chr19:50076580..50354608 [GRCh38]
Chr19:50579837..50857865 [GRCh37]
Chr19:55271649..55549677 [NCBI36]
Chr19:19q13.33		 uncertain significance
GRCh38/hg38 19q13.33-13.43(chr19:47908540-58539965)x3 copy number gain See cases [RCV000052914] Chr19:47908540..58539965 [GRCh38]
Chr19:48411797..59051332 [GRCh37]
Chr19:53103609..63743144 [NCBI36]
Chr19:19q13.33-13.43		 pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:47929575-58572206)x3 copy number gain See cases [RCV000052915] Chr19:47929575..58572206 [GRCh38]
Chr19:48432832..59083573 [GRCh37]
Chr19:53124644..63775385 [NCBI36]
Chr19:19q13.33-13.43		 pathogenic
NM_001025778.1(VRK3):c.-376583_-65+1628dup duplication Normal pregnancy [RCV000161882] Chr19:50023639..50401785 [GRCh38]
Chr19:50526896..50905042 [GRCh37]
Chr19:19q13.33		 not provided

Expression


Sequence


Reference Sequences
RefSeq Acc Id: NR_024229
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381950,123,074 - 50,123,194 (-)NCBI
GRCh371950,626,331 - 50,626,451 (-)RGD
CHM1_11950,597,911 - 50,598,031 (-)NCBI
T2T-CHM13v2.01953,140,783 - 53,140,903 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC SNAR-A10 COSMIC
GTEx SNAR-A10 GTEx
HGNC ID HGNC:34313 ENTREZGENE
Human Proteome Map SNAR-A10 Human Proteome Map
NCBI Gene 100170216 ENTREZGENE
PharmGKB PA162404026 PharmGKB
RNAcentral URS00004E56CF RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 SNAR-A10  small NF90 (ILF3) associated RNA A10    small ILF3/NF90-associated RNA A10  Symbol and/or name change 5135510 APPROVED