SNAR-D (small NF90 (ILF3) associated RNA D) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: SNAR-D (small NF90 (ILF3) associated RNA D) Homo sapiens
Analyze
Symbol: SNAR-D
Name: small NF90 (ILF3) associated RNA D
RGD ID: 2301572
HGNC Page HGNC:34324
Description: INTERACTS WITH benzo[e]pyrene; methapyrilene; methylisothiazolinone
Type: snrna
RefSeq Status: PROVISIONAL
Previously known as: small ILF3/NF90-associated RNA D
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381950,140,202 - 50,140,320 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371950,643,459 - 50,643,577 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1947,693,651 - 47,693,769 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,982,639 - 46,982,757 (-)NCBIHuRef
CHM1_11950,645,383 - 50,645,501 (-)NCBICHM1_1
T2T-CHM13v2.01953,227,644 - 53,227,762 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:17855395  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 19q13.33-13.43(chr19:49907832-58557889)x3 copy number gain See cases [RCV000052925] Chr19:49907832..58557889 [GRCh38]
Chr19:50411089..59069256 [GRCh37]
Chr19:55102901..63761068 [NCBI36]
Chr19:19q13.33-13.43		 pathogenic
GRCh38/hg38 19q13.33(chr19:50076580-50354608)x3 copy number gain See cases [RCV000052591] Chr19:50076580..50354608 [GRCh38]
Chr19:50579837..50857865 [GRCh37]
Chr19:55271649..55549677 [NCBI36]
Chr19:19q13.33		 uncertain significance
GRCh38/hg38 19q13.33-13.43(chr19:47908540-58539965)x3 copy number gain See cases [RCV000052914] Chr19:47908540..58539965 [GRCh38]
Chr19:48411797..59051332 [GRCh37]
Chr19:53103609..63743144 [NCBI36]
Chr19:19q13.33-13.43		 pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:47929575-58572206)x3 copy number gain See cases [RCV000052915] Chr19:47929575..58572206 [GRCh38]
Chr19:48432832..59083573 [GRCh37]
Chr19:53124644..63775385 [NCBI36]
Chr19:19q13.33-13.43		 pathogenic
NM_001025778.1(VRK3):c.-376583_-65+1628dup duplication Normal pregnancy [RCV000161882] Chr19:50023639..50401785 [GRCh38]
Chr19:50526896..50905042 [GRCh37]
Chr19:19q13.33		 not provided

Expression


Sequence


Reference Sequences
RefSeq Acc Id: NR_024243
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381950,140,202 - 50,140,320 (-)NCBI
GRCh371950,643,459 - 50,643,577 (-)RGD
Celera1947,693,651 - 47,693,769 (-)RGD
HuRef1946,982,639 - 46,982,757 (-)ENTREZGENE
CHM1_11950,645,383 - 50,645,501 (-)NCBI
T2T-CHM13v2.01953,227,644 - 53,227,762 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC SNAR-D COSMIC
GTEx SNAR-D GTEx
HGNC ID HGNC:34324 ENTREZGENE
Human Proteome Map SNAR-D Human Proteome Map
NCBI Gene 100170227 ENTREZGENE
PharmGKB PA162404046 PharmGKB
RNAcentral URS000046AB44 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 SNAR-D  small NF90 (ILF3) associated RNA D    small ILF3/NF90-associated RNA D  Symbol and/or name change 5135510 APPROVED