Gm10220 (predicted gene 10220) - Rat Genome Database

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Gene: Gm10220 (predicted gene 10220) Mus musculus
Analyze
No known orthologs.
Symbol: Gm10220
Name: predicted gene 10220
RGD ID: 2301534
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000067698; hypothetical protein LOC434689; uncharacterized protein LOC434689
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39526,319,762 - 26,326,423 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl526,319,762 - 26,326,419 (-)EnsemblGRCm39 Ensembl
GRCm38526,114,764 - 26,121,425 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl526,114,764 - 26,121,421 (-)EnsemblGRCm38mm10GRCm38
MGSCv37526,441,304 - 26,447,965 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36526,445,551 - 26,452,212 (-)NCBIMGSCv36mm8
Celera523,669,990 - 23,672,147 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map512.45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:28378742  


Genomics

Variants

.
Variants in Gm10220
295 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:284
Count of miRNA genes:231
Interacting mature miRNAs:244
Transcripts:ENSMUST00000088236
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904958Gmmq8_mgastrocnemius muscle mass QTL 8 (mouse)5129421124Mouse
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
7394748Mom5_mmodifier of Min 5 (mouse)Not determined5884767233475637Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000088236   ⟹   ENSMUSP00000085569
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl526,319,762 - 26,326,419 (-)Ensembl
GRCm38.p6 Ensembl526,114,764 - 26,121,421 (-)Ensembl
RefSeq Acc Id: NM_001134299   ⟹   NP_001127771
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39526,319,762 - 26,326,423 (-)NCBI
GRCm38526,114,764 - 26,121,425 (-)ENTREZGENE
MGSCv37526,441,304 - 26,447,965 (-)RGD
cM Map5 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001127771 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000085569
  ENSMUSP00000085569.4
Reference Protein Sequences
RefSeq Acc Id: NP_001127771   ⟸   NM_001134299
- UniProtKB: K7N660 (UniProtKB/TrEMBL),   Q8BPC4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000085569   ⟸   ENSMUST00000088236
Protein Domains
Disks large homolog 5 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-K7N660-F1-model_v2 AlphaFold K7N660 1-267 view protein structure

Promoters
RGD ID:6886218
Promoter ID:EPDNEW_M6560
Type:initiation region
Name:Gm10220_1
Description:Mus musculus predicted gene 10220 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38526,121,374 - 26,121,434EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3798181 AgrOrtholog
Ensembl Genes ENSMUSG00000067698 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000088236 ENTREZGENE
  ENSMUST00000088236.5 UniProtKB/TrEMBL
InterPro DUF622 UniProtKB/TrEMBL
KEGG Report mmu:434689 UniProtKB/TrEMBL
MGD MGI:3798181 ENTREZGENE
NCBI Gene 434689 ENTREZGENE
PANTHER RIKEN CDNA 4930572O03 GENE-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam Takusan UniProtKB/TrEMBL
PhenoGen Gm10220 PhenoGen
UniProt K7N660 ENTREZGENE, UniProtKB/TrEMBL
  Q8BPC4 ENTREZGENE