Tmem181c-ps (transmembrane protein 181C, pseudogene) - Rat Genome Database

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Gene: Tmem181c-ps (transmembrane protein 181C, pseudogene) Mus musculus
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Symbol: Tmem181c-ps
Name: transmembrane protein 181C, pseudogene
RGD ID: 2301518
MGI Page MGI
Description: INTERACTS WITH bis(2-ethylhexyl) phthalate; streptozocin
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: 100040525; 100040596; ENSMUSG00000079729; ENSMUSG00000079731; Tmem181d-; Tmem181d-ps; transmembrane protein 181D, pseudogene
Related Functional Gene: Tmem181a  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39176,877,502 - 6,888,324 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl176,881,152 - 6,907,189 (-)EnsemblGRCm39 Ensembl
GRCm38176,610,103 - 6,620,925 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl176,613,753 - 6,639,790 (-)EnsemblGRCm38mm10GRCm38
MGSCv37176,635,808 - 6,644,102 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36176,615,632 - 6,654,964 (+)NCBIMGSCv36mm8
Cytogenetic Map17A1NCBI
cM Map174.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Tmem181c-ps
217 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:485
Count of miRNA genes:352
Interacting mature miRNAs:372
Transcripts:ENSMUST00000115772, ENSMUST00000180035
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
1302196Myaa1_mmodifier of Yaa 1 (mouse)Not determined17120975022Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
1357452Vtbt18_mvertebral trabecular bone trait 18 (mouse)Not determined17120975022Mouse
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125662076Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse

Markers in Region
RH126072  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17A1UniSTS
Whitehead/MRC_RH17148.66UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000115772
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl176,881,152 - 6,907,189 (-)Ensembl
GRCm38.p6 Ensembl176,613,753 - 6,639,790 (-)Ensembl
RefSeq Acc Id: NR_028305
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39176,877,502 - 6,888,324 (-)NCBI
GRCm38176,610,103 - 6,620,925 (-)ENTREZGENE
MGSCv37176,635,808 - 6,644,102 (+)RGD
cM Map17 ENTREZGENE
Sequence:
Promoters
RGD ID:13674656
Promoter ID:EPDNEW_M21477
Type:initiation region
Name:Tmem181c-ps_1
Description:Mus musculus transmembrane protein 181C, pseudogene (Tmem181c-ps),non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38176,620,879 - 6,620,939EPDNEW
RGD ID:13674660
Promoter ID:EPDNEW_M21479
Type:single initiation site
Name:AK178082_2
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21478  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38176,623,643 - 6,623,703EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000093880 Ensembl
MGD MGI:3780993 ENTREZGENE
NCBI Gene 100040525 ENTREZGENE
PhenoGen Tmem181c-ps PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Tmem181c-ps  transmembrane protein 181C, pseudogene  Tmem181d-ps  transmembrane protein 181D, pseudogene  Data merged from RGD:2301642 737654 PROVISIONAL