TRF-GAA1-1 (tRNA-Phe (anticodon GAA) 1-1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: TRF-GAA1-1 (tRNA-Phe (anticodon GAA) 1-1) Homo sapiens
Analyze
Symbol: TRF-GAA1-1
Name: tRNA-Phe (anticodon GAA) 1-1
RGD ID: 2300840
HGNC Page HGNC:34699
Description:
Type: trna
RefSeq Status: MODEL
Previously known as: transfer RNA-Phe (GAA) 1-1; TRF-GAA1-5; tRNA-Phe (GAA) 1-1; TRNAF3
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,790,722 - 28,790,794 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37628,758,499 - 28,758,571 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6p22.1NCBI
HuRef628,566,357 - 28,566,429 (-)NCBIHuRef
CHM1_1628,760,741 - 28,760,813 (-)NCBICHM1_1
T2T-CHM13v2.0628,665,492 - 28,665,564 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:18984615  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6p22.1(chr6:28669195-28873863)x3 copy number gain See cases [RCV000136746] Chr6:28669195..28873863 [GRCh38]
Chr6:28636972..28841640 [GRCh37]
Chr6:28744951..28949619 [NCBI36]
Chr6:6p22.1		 benign
GRCh38/hg38 6p25.2-21.33(chr6:3224310-30657190)x3 copy number gain See cases [RCV000138956] Chr6:3224310..30657190 [GRCh38]
Chr6:3224544..30624967 [GRCh37]
Chr6:3169543..30732946 [NCBI36]
Chr6:6p25.2-21.33		 pathogenic
GRCh38/hg38 6p22.1(chr6:28763187-29769828)x3 copy number gain See cases [RCV000141858] Chr6:28763187..29769828 [GRCh38]
Chr6:28730964..29737605 [GRCh37]
Chr6:28838943..29845584 [NCBI36]
Chr6:6p22.1		 uncertain significance
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3		 pathogenic
GRCh38/hg38 6p22.3-21.33(chr6:18120520-30767516)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|See cases [RCV000052180] Chr6:18120520..30767516 [GRCh38]
Chr6:18120751..30735293 [GRCh37]
Chr6:18228730..30843272 [NCBI36]
Chr6:6p22.3-21.33		 pathogenic

Expression


Sequence



Additional Information

Database Acc Id Source(s)
COSMIC TRF-GAA1-1 COSMIC
GTEx TRF-GAA1-1 GTEx
HGNC ID HGNC:34699 ENTREZGENE
Human Proteome Map TRF-GAA1-1 Human Proteome Map
NCBI Gene 100189137 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-09 TRF-GAA1-1  tRNA-Phe (anticodon GAA) 1-1    tRNA-Phe (GAA) 1-1  Symbol and/or name change 5135510 APPROVED
2018-11-29 TRF-GAA1-1  tRNA-Phe (GAA) 1-1    transfer RNA-Phe (GAA) 1-1  Symbol and/or name change 5135510 APPROVED
2016-02-29 TRF-GAA1-1  transfer RNA-Phe (GAA) 1-1  TRF-GAA1-5  transfer RNA-Phe (GAA) 1-5  Symbol and/or name change 5135510 APPROVED
2014-06-24 TRF-GAA1-5  transfer RNA-Phe (GAA) 1-5  TRNAF3  transfer RNA phenylalanine 3 (anticodon GAA)  Symbol and/or name change 5135510 APPROVED