TRM-CAT5-1 (tRNA-Met (anticodon CAT) 5-1) - Rat Genome Database

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Gene: TRM-CAT5-1 (tRNA-Met (anticodon CAT) 5-1) Homo sapiens
Analyze
Symbol: TRM-CAT5-1
Name: tRNA-Met (anticodon CAT) 5-1
RGD ID: 2300674
HGNC Page HGNC:34869
Description:
Type: trna
RefSeq Status: MODEL
Previously known as: transfer RNA-Met (CAT) 5-1; tRNA-Met (CAT) 5-1; TRNAM16
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38626,701,483 - 26,701,555 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37626,701,712 - 26,701,784 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6p22.2NCBI
CHM1_1626,703,749 - 26,703,821 (+)NCBICHM1_1
T2T-CHM13v2.0626,569,870 - 26,569,942 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:18984615  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6p25.2-21.33(chr6:3224310-30657190)x3 copy number gain See cases [RCV000138956] Chr6:3224310..30657190 [GRCh38]
Chr6:3224544..30624967 [GRCh37]
Chr6:3169543..30732946 [NCBI36]
Chr6:6p25.2-21.33		 pathogenic
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3		 pathogenic
GRCh38/hg38 6p22.3-21.33(chr6:18120520-30767516)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|See cases [RCV000052180] Chr6:18120520..30767516 [GRCh38]
Chr6:18120751..30735293 [GRCh37]
Chr6:18228730..30843272 [NCBI36]
Chr6:6p22.3-21.33		 pathogenic
GRCh38/hg38 6p22.2-22.1(chr6:26280579-28727313)x3 copy number gain See cases [RCV000133692] Chr6:26280579..28727313 [GRCh38]
Chr6:26280807..28695090 [GRCh37]
Chr6:26388786..28803069 [NCBI36]
Chr6:6p22.2-22.1		 uncertain significance

Expression


Sequence



Additional Information

Database Acc Id Source(s)
COSMIC TRM-CAT5-1 COSMIC
GTEx TRM-CAT5-1 GTEx
HGNC ID HGNC:34869 ENTREZGENE
Human Proteome Map TRM-CAT5-1 Human Proteome Map
NCBI Gene 100189303 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-09 TRM-CAT5-1  tRNA-Met (anticodon CAT) 5-1    tRNA-Met (CAT) 5-1  Symbol and/or name change 5135510 APPROVED
2018-11-29 TRM-CAT5-1  tRNA-Met (CAT) 5-1    transfer RNA-Met (CAT) 5-1  Symbol and/or name change 5135510 APPROVED
2014-06-24 TRM-CAT5-1  transfer RNA-Met (CAT) 5-1  TRNAM16  transfer RNA methionine 16 (anticodon CAU)  Symbol and/or name change 5135510 APPROVED