Pnkd (PNKD metallo-beta-lactamase domain containing)

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Gene: Pnkd (PNKD metallo-beta-lactamase domain containing) Rattus norvegicus

Analyze

Symbol:

Pnkd

Name:

PNKD metallo-beta-lactamase domain containing

RGD ID:

2300155

Description:

Predicted to enable hydroxyacylglutathione hydrolase activity and metal ion binding activity. Predicted to be involved in methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione. Predicted to act upstream of or within modulation of chemical synaptic transmission; neuromuscular process controlling posture; and regulation of dopamine metabolic process. Predicted to be located in membrane. Predicted to be active in mitochondrion and presynaptic cytosol. Human ortholog(s) of this gene implicated in paroxysmal nonkinesigenic dyskinesia 1. Orthologous to human PNKD (PNKD metallo-beta-lactamase domain containing); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

MGC188259; Mr-1; myofibrillogenesis regulator 1; paroxysmal nonkinesigenic dyskinesia; paroxysmal nonkinesiogenic dyskinesia; PNKD, MBL domain containing; probable hydrolase PNKD

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	9	75,868,620 - 75,937,126 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	75,867,468 - 75,937,124 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	84,314,159 - 84,382,631 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	9	89,443,080 - 89,511,569 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	9	87,829,296 - 87,897,762 (+)	NCBI	Rnor_WKY
Rnor_6.0	9	81,566,074 - 81,634,531 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	81,566,074 - 81,634,534 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	81,332,155 - 81,400,726 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	73,611,610 - 73,697,690 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	73,445,105 - 73,513,517 (+)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alacrima, achalasia, and impaired intellectual development syndrome (ISO)

cerebrotendinous xanthomatosis (ISO)

dystonia (ISO)

myofibrillar myopathy 1 (ISO)

Neurodevelopmental Disorders (ISO)

paroxysmal nonkinesigenic dyskinesia 1 (ISO)

renal cell carcinoma (ISO)

Severe Combined Immunodeficiency with Microcephaly, Growth Retardation, and Sensitivity to Ionizing Radiation (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

atrazine (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (EXP)

chlorpyrifos (EXP)

choline (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dibutyl phthalate (EXP,ISO)

dioxygen (ISO)

disodium selenite (ISO)

epoxiconazole (ISO)

folic acid (ISO)

fulvestrant (ISO)

genistein (ISO)

glafenine (EXP)

glyphosate (EXP)

hypochlorous acid (ISO)

imidacloprid (EXP)

L-methionine (ISO)

mercury dichloride (EXP)

methyl methanesulfonate (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

Salinomycin (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP,ISO)

thiabendazole (EXP)

thioacetamide (EXP)

tributylstannane (EXP)

triphenyl phosphate (EXP)

Triptolide (EXP)

triptonide (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione (IEA)

negative regulation of neurotransmitter secretion (ISO)

neuromuscular process controlling posture (ISO)

regulation of dopamine metabolic process (ISO)

regulation of synaptic transmission, dopaminergic (ISO)

Cellular Component

membrane (ISO)

mitochondrion (IBA,ISO)

presynaptic cytosol (ISO)

Molecular Function

hydrolase activity (IBA)

hydroxyacylglutathione hydrolase activity (IEA)

metal ion binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:12477932	PMID:16100249	PMID:18614015	PMID:22214848	PMID:25542256	PMID:25730884

Genomics

Comparative Map Data

Pnkd
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	9	75,868,620 - 75,937,126 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	75,867,468 - 75,937,124 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	84,314,159 - 84,382,631 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	9	89,443,080 - 89,511,569 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	9	87,829,296 - 87,897,762 (+)	NCBI	Rnor_WKY
Rnor_6.0	9	81,566,074 - 81,634,531 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	81,566,074 - 81,634,534 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	81,332,155 - 81,400,726 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	73,611,610 - 73,697,690 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	73,445,105 - 73,513,517 (+)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

PNKD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	218,270,519 - 218,346,793 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	2	218,269,651 - 218,346,793 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	219,135,242 - 219,211,516 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	218,843,359 - 218,919,760 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	212,901,694 - 212,978,127 (+)	NCBI		Celera
Cytogenetic Map	2	q35	NCBI
HuRef	2	210,988,212 - 211,064,476 (+)	NCBI		HuRef
CHM1_1	2	219,141,604 - 219,218,160 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	218,756,220 - 218,832,888 (+)	NCBI		T2T-CHM13v2.0

Pnkd
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	74,323,757 - 74,392,851 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	74,324,089 - 74,392,853 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	74,284,599 - 74,353,692 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	74,284,930 - 74,353,694 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	74,331,608 - 74,400,266 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	74,218,241 - 74,286,899 (+)	NCBI		MGSCv36	mm8
Celera	1	74,846,387 - 74,914,676 (+)	NCBI		Celera
Cytogenetic Map	1	C3	NCBI

Pnkd
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	15,030,436 - 15,104,084 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	15,030,436 - 15,104,084 (-)	NCBI	ChiLan1.0	ChiLan1.0

PNKD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2B	224,127,504 - 224,204,046 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	224,127,504 - 224,204,046 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2B	105,529,775 - 105,606,207 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

PNKD
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	24,948,763 - 25,008,542 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	24,948,932 - 25,005,144 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	25,769,014 - 25,828,461 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	24,964,913 - 25,024,609 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	24,964,994 - 25,024,608 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	24,870,239 - 24,929,662 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	24,804,494 - 24,863,959 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	24,824,128 - 24,883,632 (+)	NCBI		UU_Cfam_GSD_1.0

Pnkd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	174,457,181 - 174,522,677 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936569	799,926 - 865,700 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936569	799,963 - 865,462 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PNKD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	120,387,113 - 120,410,476 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	120,345,541 - 120,411,648 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	133,367,669 - 133,370,492 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PNKD
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	104,152,005 - 104,227,624 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	104,152,081 - 104,229,219 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	95,173,913 - 95,249,814 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pnkd
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624823	6,674,917 - 6,761,025 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624823	6,675,702 - 6,761,133 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Pnkd
252 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1205
Count of miRNA genes:	252
Interacting mature miRNAs:	307
Transcripts:	ENSRNOT00000020049, ENSRNOT00000046229, ENSRNOT00000074131
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	40194188	85194188	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	40194188	85194188	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	42495343	79271511	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	42791513	87976209	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	55847841	77026453	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	56627713	78595166	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	9	56627713	78595166	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56627713	78595166	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	62072275	96470995	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	62072275	96470995	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	63869687	108869687	Rat
731171	Glom6	Glomerulus QTL 6	2.8	0.0003	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	9	64573531	109573531	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	75712843	111552878	Rat

Markers in Region

RH128628

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	75,870,710 - 75,870,916 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	81,568,165 - 81,568,370	NCBI	Rnor6.0
Rnor_5.0	9	81,334,712 - 81,334,917	UniSTS	Rnor5.0
RGSC_v3.4	9	73,613,701 - 73,613,906	UniSTS	RGSC3.4
Celera	9	73,447,196 - 73,447,401	UniSTS
Cytogenetic Map	9	q33	UniSTS

RH130780

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	75,871,995 - 75,872,213 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	81,569,450 - 81,569,667	NCBI	Rnor6.0
Rnor_5.0	9	81,335,997 - 81,336,214	UniSTS	Rnor5.0
RGSC_v3.4	9	73,614,986 - 73,615,203	UniSTS	RGSC3.4
Celera	9	73,448,481 - 73,448,698	UniSTS
RH 3.4 Map	9	708.89	UniSTS
Cytogenetic Map	9	q33	UniSTS

AI854243

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	75,869,541 - 75,870,766 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	81,566,996 - 81,568,220	NCBI	Rnor6.0
Rnor_5.0	9	81,333,543 - 81,334,767	UniSTS	Rnor5.0
RGSC_v3.4	9	73,612,532 - 73,613,756	UniSTS	RGSC3.4
Celera	9	73,446,027 - 73,447,251	UniSTS
Cytogenetic Map	9	q33	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	41	41	5	41	2	4	74	35	40	11	2
Low			16		14		6	7			1		6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001134751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001134753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA924823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI395664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK600421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000020049 ⟹ ENSRNOP00000020048

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,917,828 - 75,937,119 (+)	Ensembl
Rnor_6.0 Ensembl	9	81,615,253 - 81,634,531 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000046229 ⟹ ENSRNOP00000049462

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,868,620 - 75,937,124 (+)	Ensembl
Rnor_6.0 Ensembl	9	81,566,074 - 81,634,529 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000074131 ⟹ ENSRNOP00000066948

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,867,468 - 75,871,072 (+)	Ensembl
Rnor_6.0 Ensembl	9	81,566,074 - 81,568,532 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000081106 ⟹ ENSRNOP00000071500

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,868,610 - 75,935,412 (+)	Ensembl
Rnor_6.0 Ensembl	9	81,615,251 - 81,632,360 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000081406

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	81,566,078 - 81,586,328 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000089580 ⟹ ENSRNOP00000071630

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	81,631,409 - 81,633,067 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000090383 ⟹ ENSRNOP00000068830

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,868,620 - 75,937,124 (+)	Ensembl
Rnor_6.0 Ensembl	9	81,566,074 - 81,634,534 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119949 ⟹ ENSRNOP00000077589

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,868,019 - 75,871,072 (+)	Ensembl

RefSeq Acc Id:

NM_001134750 ⟹ NP_001128222

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	75,868,620 - 75,937,126 (+)	NCBI
Rnor_6.0	9	81,566,074 - 81,634,531 (+)	NCBI
Rnor_5.0	9	81,332,155 - 81,400,726 (+)	NCBI
RGSC_v3.4	9	73,611,610 - 73,697,690 (+)	RGD
Celera	9	73,445,105 - 73,513,517 (+)	RGD

Sequence:

show sequence

CCCGAACATGGCGGCGGTGGTAGCTGCTACGGCGCTGAAGGGCCGGGGGGCGAGAAATGCCCGC
GTCCTCCGGGGGATCCTCTCTGGAGCGACAGCTAACAAGGCTTCCCAGAACAGGACCAGAGCAC
TGCAGAGCCACAGCTCACCAGAATGCAAGGAGGAGCCTGAGCCCCTCTCCCCTGAGCTAGAATA
CATTCCCAGAAAGAGGGGCAAGAACCCCATGAAAGCTGTGGGACTAGCCTGGTACAGCCTGTAC
ACCCGGACCTGGCTCGGGTACCTCTTCTACCGACAGCAGCTCCGGAGGGCTCGGAATCGCTTTC
CCAAAGGCCACTCCAAAACTCAGCCCAGACTCTTCAATGGAGTGAAGGTGCTTCCCATCCCTGT
CCTCTCGGACAACTACAGCTACCTCATCATCGACACCCAGGCTGGGCTGGCAGTGGCTGTGGAC
CCCTCAGACCCGAGGGCTGTGCAGGCTTCTATTGAAAAGGAAAGAGTTAACTTGGTTGCCATTC
TCTGTACCCACAAGCACTGGGACCACAGTGGAGGAAACCGTGACCTCAGCCGGCGGCACAGGGA
CTGTCGAGTGTATGGGAGCCCTCAGGATGGTATCCCCTACCTCACCCATCCCCTGTGTCATCAA
GATGTGGTCAGCGTGGGACGACTTCAGATTCGAGCCCTGGCTACCCCTGGCCACACCCAAGGCC
ATCTGGTCTACCTGCTGGATGGGGAGCCCTACAAGGGTCCCTCCTGCCTCTTCTCAGGGGACCT
GCTCTTCCTCTCTGGCTGTGGACGGACCTTCGAAGGCACAGCAGAGACCATGCTGAGCTCACTG
GACACTGTGTTGGACCTGGGCGATGACACCCTGCTGTGGCCTGGACATGAATATGCAGAAGAGA
ACCTGGGCTTTGCGGGTGTGGTGGAGCCCGAGAACGTGGCTCGTGAGAGGAAGATGCAGTGGGT
ACAGAGGCAACGGATGGAACGCAAGAGCACATGCCCATCCACCCTGGGAGAGGAGCGCGCCTAC
AACCCATTCCTGAGAACCCACTGCCTGGCACTACAGGAGGCTCTGGGGCCCGGGCCTGGCCCCA
CCAGTGATGATGGCTGCTCCCGGGCCCAGCTCCTGGAGGAGCTGCGCCGGCTGAAGGACATGCA
TAAGAGCAAGTGAATAGCCCCAGTTCAGGCTCTCCCTTCTGCAGGGAGAGCACACCCACCACCC
ACACCTCGCCATCCTCTTCATCACTAATCCTACCACCACCATTGGTGCCCTAGGCAGCACTAAT
CCTCCAGACTGGCCAGAGAGGGCAGAGCCCGGGCAATGGGACCTAGAGGAGGAAGCAGTGGGAG
GCTCAGAGACCCCACGAAGGACAGATGGTGTTTAAGGTAAAAGGAAGGAAGCGCCTGGAACATC
TCCAGACTTTGCACCTTCAAGGATCTGCCTCCCTTCCCCTACTTGTGGACCAATAGCCAGACCA
TGAAGGCTGCTGTTGGCTCCTGCTCCAGAGGCCACACTAGAACCCAGGAGAACAGAGCCTAGTC
TAGACCAGGCTAATCTGTCTTCCACCTTACCCCATGCAGGATTGTCACCCCCCCCCAAAATGAT
CTAAAGTGTGGTGCCTGGGAAAGTGGTCACCAACAGGGGCAGCCAAACTCTGGGTGACTGAGAC
TCTAAACTCCACCCTAACTACCTTGCTAAGACATTGCCAGGCAGAGCCATTCCTAAGAACACCC
AAGGGCTGGAAGCCTGCCTCTGGCCAATCCCTGCCTCAGTGGATGCCCTGAAGGCCAGAGAGAA
AGGTTCCTGATTGCCATGGAATCTTCTGCTTCAGGCCAGGGAGTCAGGATGCTGGGACACCATG
CACATCTGTTCTGGGTCTGCCACTGGCCTCTGCCCCTGCCCTGGGTCATAGGGCCTGCCTCTCC
AGGGGAGAGGGAACTGTGGTCTGCCTCAGAGATCTGCTTCTCCTTTTGGCCCTTGGTCTTGGGA
ATCCCTGCCTGCCTCCTGTCTTACTTAACCTCTCTTGCTTTATCCTCGGCCCTTTTCCTCTCTA
AGTCATTAGAGGCTGACCTTTCTTTCAGCCCTGGTACTCATTTGCAGTTTGCCAAAAACCTTCA
TTCCCACGTGATTTCCCACAGGATCCCGGGGCCCCTTGCTGGCAGTGTGCAGAAAGCAGAGGTC
TAGGAGCAGGAAGCTCCTGTGAGCGGCAGCTTCCAGGACTTCAGGCCTGGGTATACCCCACTGC
TCACCCCCCTCCAGATCTGCTGATCCTCTGGTCTCAGGTCAAGGACCCTTTGTGGCCGCGGGAG
CACTATGGTCGTTCAGCAGGCACACCTTGGGTTAGCCAGGAGCCACATCTTTCTGTGTCAGAGC
CTTCCACTGGGCTGCGCGATGCCCTCTGTAGTTCCTCTGAGACGCCCCTGCCCTCAGTTTCCCC
TTTCATCTGACTTCGGCTGCCCTCTCCAGCCCCAGCCTTTGGAACTCACTCTAGCAATACCACC
AGACTAGTTAGCCTTCCCGGCCCCCAAGACACTTGCGGTTTCATGCCTTTGTGCCTTTCGCTCA
CGCGGTTTCTTCAGCTGGAATGCCTTCCCGCTCCTCCCGCCTCCTCTGCCTGGCAAGCCCCTAT
TAGCCTCTCCCAGGCCCCTCCCTCCCCCAGGAAGGCACCCTCCACCCCTCTCTTCCGGGCTACC
TCTGCACCGTGTAAATGCTTCTCTCGTGGCACCTATCACACTGTATTTTACTTGTTTACATGTT
TGTCTCCCCTTCTAGACTGTGAATCCTTAAGGGCATGGACTGTATCTTATGCATCTCTGTATTT
CTGCGCCTAGCACGGTGCCTGGCACACAGTAGGCGCTCAATAAATGTTGAATGAATGATTTAAA
AAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001134751 ⟹ NP_001128223

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	75,917,835 - 75,937,126 (+)	NCBI
Rnor_6.0	9	81,615,253 - 81,634,531 (+)	NCBI
Rnor_5.0	9	81,332,155 - 81,400,726 (+)	NCBI
RGSC_v3.4	9	73,611,610 - 73,697,690 (+)	RGD
Celera	9	73,494,292 - 73,513,517 (+)	NCBI

Sequence:

show sequence

ATGGCTTGGCAGAGCTGGCCGGCGCCTTGGTTGTGGGTCTCGGGCTGCTGGCTGCTATTCTTCG
CCTTCGTGCTGCTTTTGAGTCCCCGCGGTTTCCAAGAACGGCGGGGTTTCCGCGGCCTCCTCAT
GACGCGCAGCCAGCGGCTGCTCTTCCGAATCGGGTACAGCCTGTACACCCGGACCTGGCTCGGG
TACCTCTTCTACCGACAGCAGCTCCGGAGGGCTCGGAATCGCTTTCCCAAAGGCCACTCCAAAA
CTCAGCCCAGACTCTTCAATGGAGTGAAGGTGCTTCCCATCCCTGTCCTCTCGGACAACTACAG
CTACCTCATCATCGACACCCAGGCTGGGCTGGCAGTGGCTGTGGACCCCTCAGACCCGAGGGCT
GTGCAGGCTTCTATTGAAAAGGAAAGAGTTAACTTGGTTGCCATTCTCTGTACCCACAAGCACT
GGGACCACAGTGGAGGAAACCGTGACCTCAGCCGGCGGCACAGGGACTGTCGAGTGTATGGGAG
CCCTCAGGATGGTATCCCCTACCTCACCCATCCCCTGTGTCATCAAGATGTGGTCAGCGTGGGA
CGACTTCAGATTCGAGCCCTGGCTACCCCTGGCCACACCCAAGGCCATCTGGTCTACCTGCTGG
ATGGGGAGCCCTACAAGGGTCCCTCCTGCCTCTTCTCAGGGGACCTGCTCTTCCTCTCTGGCTG
TGGACGGACCTTCGAAGGCACAGCAGAGACCATGCTGAGCTCACTGGACACTGTGTTGGACCTG
GGCGATGACACCCTGCTGTGGCCTGGACATGAATATGCAGAAGAGAACCTGGGCTTTGCGGGTG
TGGTGGAGCCCGAGAACGTGGCTCGTGAGAGGAAGATGCAGTGGGTACAGAGGCAACGGATGGA
ACGCAAGAGCACATGCCCATCCACCCTGGGAGAGGAGCGCGCCTACAACCCATTCCTGAGAACC
CACTGCCTGGCACTACAGGAGGCTCTGGGGCCCGGGCCTGGCCCCACCAGTGATGATGGCTGCT
CCCGGGCCCAGCTCCTGGAGGAGCTGCGCCGGCTGAAGGACATGCATAAGAGCAAGTGAATAGC
CCCAGTTCAGGCTCTCCCTTCTGCAGGGAGAGCACACCCACCACCCACACCTCGCCATCCTCTT
CATCACTAATCCTACCACCACCATTGGTGCCCTAGGCAGCACTAATCCTCCAGACTGGCCAGAG
AGGGCAGAGCCCGGGCAATGGGACCTAGAGGAGGAAGCAGTGGGAGGCTCAGAGACCCCACGAA
GGACAGATGGTGTTTAAGGTAAAAGGAAGGAAGCGCCTGGAACATCTCCAGACTTTGCACCTTC
AAGGATCTGCCTCCCTTCCCCTACTTGTGGACCAATAGCCAGACCATGAAGGCTGCTGTTGGCT
CCTGCTCCAGAGGCCACACTAGAACCCAGGAGAACAGAGCCTAGTCTAGACCAGGCTAATCTGT
CTTCCACCTTACCCCATGCAGGATTGTCACCCCCCCCCAAAATGATCTAAAGTGTGGTGCCTGG
GAAAGTGGTCACCAACAGGGGCAGCCAAACTCTGGGTGACTGAGACTCTAAACTCCACCCTAAC
TACCTTGCTAAGACATTGCCAGGCAGAGCCATTCCTAAGAACACCCAAGGGCTGGAAGCCTGCC
TCTGGCCAATCCCTGCCTCAGTGGATGCCCTGAAGGCCAGAGAGAAAGGTTCCTGATTGCCATG
GAATCTTCTGCTTCAGGCCAGGGAGTCAGGATGCTGGGACACCATGCACATCTGTTCTGGGTCT
GCCACTGGCCTCTGCCCCTGCCCTGGGTCATAGGGCCTGCCTCTCCAGGGGAGAGGGAACTGTG
GTCTGCCTCAGAGATCTGCTTCTCCTTTTGGCCCTTGGTCTTGGGAATCCCTGCCTGCCTCCTG
TCTTACTTAACCTCTCTTGCTTTATCCTCGGCCCTTTTCCTCTCTAAGTCATTAGAGGCTGACC
TTTCTTTCAGCCCTGGTACTCATTTGCAGTTTGCCAAAAACCTTCATTCCCACGTGATTTCCCA
CAGGATCCCGGGGCCCCTTGCTGGCAGTGTGCAGAAAGCAGAGGTCTAGGAGCAGGAAGCTCCT
GTGAGCGGCAGCTTCCAGGACTTCAGGCCTGGGTATACCCCACTGCTCACCCCCCTCCAGATCT
GCTGATCCTCTGGTCTCAGGTCAAGGACCCTTTGTGGCCGCGGGAGCACTATGGTCGTTCAGCA
GGCACACCTTGGGTTAGCCAGGAGCCACATCTTTCTGTGTCAGAGCCTTCCACTGGGCTGCGCG
ATGCCCTCTGTAGTTCCTCTGAGACGCCCCTGCCCTCAGTTTCCCCTTTCATCTGACTTCGGCT
GCCCTCTCCAGCCCCAGCCTTTGGAACTCACTCTAGCAATACCACCAGACTAGTTAGCCTTCCC
GGCCCCCAAGACACTTGCGGTTTCATGCCTTTGTGCCTTTCGCTCACGCGGTTTCTTCAGCTGG
AATGCCTTCCCGCTCCTCCCGCCTCCTCTGCCTGGCAAGCCCCTATTAGCCTCTCCCAGGCCCC
TCCCTCCCCCAGGAAGGCACCCTCCACCCCTCTCTTCCGGGCTACCTCTGCACCGTGTAAATGC
TTCTCTCGTGGCACCTATCACACTGTATTTTACTTGTTTACATGTTTGTCTCCCCTTCTAGACT
GTGAATCCTTAAGGGCATGGACTGTATCTTATGCATCTCTGTATTTCTGCGCCTAGCACGGTGC
CTGGCACACAGTAGGCGCTCAATAAATGTTGAATGAATGATTTAA

hide sequence

RefSeq Acc Id:

NM_001134753 ⟹ NP_001128225

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	75,868,620 - 75,871,074 (+)	NCBI
Rnor_6.0	9	81,566,074 - 81,568,528 (+)	NCBI
Rnor_5.0	9	81,332,155 - 81,400,726 (+)	NCBI
RGSC_v3.4	9	73,611,610 - 73,697,690 (+)	RGD
Celera	9	73,445,105 - 73,447,559 (+)	NCBI

Sequence:

show sequence

CCCGAACATGGCGGCGGTGGTAGCTGCTACGGCGCTGAAGGGCCGGGGGGCGAGAAATGCCCGC
GTCCTCCGGGGGATCCTCTCTGGAGCGACAGCTAACAAGGCTTCCCAGAACAGGACCAGAGCAC
TGCAGAGCCACAGCTCACCAGAATGCAAGGAGGAGCCTGAGCCCCTCTCCCCTGAGCTAGAATA
CATTCCCAGAAAGAGGGGCAAGAACCCCATGAAAGCTGTGGGACTAGCCTGGGCCATCGGCTTC
CCCTGTGGTATCCTCTTCTTCGTCCTCACCAAGCAGGAAGTGGACAAGGACCGCTTGAAGCAGA
TGAAGGCTCGTCAGAACATGCGGGTGTCCAACACGGGCGAGTATGAGAGCCAGAGGTTCAGGGC
TTCGCCCCAACAAGCCCAGTTCCCTGAAGTTGGGTCTGGAGTACAGACCTGAGTAAGGATCATT
GCAACCTTGTGCTAGACTTTATTGACTGATGTGTAGCCAACTGTGTTCATTGCTCCTGAGGCCC
ACCAGAGGGCGCATGATGCCCAAACCGCTGCCAGCACCCACCTCTTCTTCCACATGGTAGAAGG
AGTCAAATGCAAATAAAGTTATTAAGTCCTGGCTTGGAAGGGAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001128222	(Get FASTA)	NCBI Sequence Viewer
	NP_001128223	(Get FASTA)	NCBI Sequence Viewer
	NP_001128225	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68228	(Get FASTA)	NCBI Sequence Viewer
	EDL75343	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001128222 ⟸ NM_001134750
- Peptide Label:	isoform 1
- UniProtKB:	B4F7D2 (UniProtKB/TrEMBL), F1M1E4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAVVAATALKGRGARNARVLRGILSGATANKASQNRTRALQSHSSPECKEEPEPLSPELEYIP RKRGKNPMKAVGLAWYSLYTRTWLGYLFYRQQLRRARNRFPKGHSKTQPRLFNGVKVLPIPVLS DNYSYLIIDTQAGLAVAVDPSDPRAVQASIEKERVNLVAILCTHKHWDHSGGNRDLSRRHRDCR VYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGHTQGHLVYLLDGEPYKGPSCLFSGDLLF LSGCGRTFEGTAETMLSSLDTVLDLGDDTLLWPGHEYAEENLGFAGVVEPENVARERKMQWVQR QRMERKSTCPSTLGEERAYNPFLRTHCLALQEALGPGPGPTSDDGCSRAQLLEELRRLKDMHKS K hide sequence

RefSeq Acc Id:	NP_001128225 ⟸ NM_001134753
- Peptide Label:	isoform 3
- UniProtKB:	B4F7D2 (UniProtKB/TrEMBL), M0RBK9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAVVAATALKGRGARNARVLRGILSGATANKASQNRTRALQSHSSPECKEEPEPLSPELEYIP RKRGKNPMKAVGLAWAIGFPCGILFFVLTKQEVDKDRLKQMKARQNMRVSNTGEYESQRFRASP QQAQFPEVGSGVQT hide sequence

RefSeq Acc Id:	NP_001128223 ⟸ NM_001134751
- Peptide Label:	isoform 2
- UniProtKB:	D3ZXB0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAWQSWPAPWLWVSGCWLLFFAFVLLLSPRGFQERRGFRGLLMTRSQRLLFRIGYSLYTRTWLG YLFYRQQLRRARNRFPKGHSKTQPRLFNGVKVLPIPVLSDNYSYLIIDTQAGLAVAVDPSDPRA VQASIEKERVNLVAILCTHKHWDHSGGNRDLSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVG RLQIRALATPGHTQGHLVYLLDGEPYKGPSCLFSGDLLFLSGCGRTFEGTAETMLSSLDTVLDL GDDTLLWPGHEYAEENLGFAGVVEPENVARERKMQWVQRQRMERKSTCPSTLGEERAYNPFLRT HCLALQEALGPGPGPTSDDGCSRAQLLEELRRLKDMHKSK hide sequence

RefSeq Acc Id:

ENSRNOP00000071630 ⟸ ENSRNOT00000089580

RefSeq Acc Id:

ENSRNOP00000068830 ⟸ ENSRNOT00000090383

RefSeq Acc Id:

ENSRNOP00000049462 ⟸ ENSRNOT00000046229

RefSeq Acc Id:

ENSRNOP00000071500 ⟸ ENSRNOT00000081106

RefSeq Acc Id:

ENSRNOP00000020048 ⟸ ENSRNOT00000020049

RefSeq Acc Id:

ENSRNOP00000066948 ⟸ ENSRNOT00000074131

RefSeq Acc Id:

ENSRNOP00000077589 ⟸ ENSRNOT00000119949

Protein Domains

Lactamase_B

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M1E4-F1-model_v2	AlphaFold	F1M1E4	1-385	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696745

Promoter ID:

EPDNEW_R7270

Type:

multiple initiation site

Name:

Pnkd_1

Description:

paroxysmal nonkinesigenic dyskinesia

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R7273

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	81,566,070 - 81,566,130	EPDNEW

RGD ID:

13696748

Promoter ID:

EPDNEW_R7273

Type:

initiation region

Name:

Pnkd_2

Description:

paroxysmal nonkinesigenic dyskinesia

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R7270

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	81,615,285 - 81,615,345	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2300155	AgrOrtholog
BioCyc Gene	G2FUF-27142	BioCyc
Ensembl Genes	ENSRNOG00000014806	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000020048	ENTREZGENE
	ENSRNOP00000020048.2	UniProtKB/TrEMBL
	ENSRNOP00000049462	ENTREZGENE
	ENSRNOP00000049462.3	UniProtKB/TrEMBL
	ENSRNOP00000066948.2	UniProtKB/TrEMBL
	ENSRNOP00000068830.1	UniProtKB/TrEMBL
	ENSRNOP00000071500.2	UniProtKB/TrEMBL
	ENSRNOP00000077589.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000020049	ENTREZGENE
	ENSRNOT00000020049.5	UniProtKB/TrEMBL
	ENSRNOT00000046229	ENTREZGENE
	ENSRNOT00000046229.5	UniProtKB/TrEMBL
	ENSRNOT00000074131.3	UniProtKB/TrEMBL
	ENSRNOT00000081106.2	UniProtKB/TrEMBL
	ENSRNOT00000090383.2	UniProtKB/TrEMBL
	ENSRNOT00000119949.1	UniProtKB/TrEMBL
Gene3D-CATH	3.60.15.10	UniProtKB/TrEMBL
InterPro	Beta-lactamas-like	UniProtKB/TrEMBL
	Clx_II_MBL	UniProtKB/TrEMBL
	DUF4748	UniProtKB/TrEMBL
	HAGH_C	UniProtKB/TrEMBL
	Hydroxyacylglutathione_Hdrlase	UniProtKB/TrEMBL
	Metallo-hydrolase/OxRdtase	UniProtKB/TrEMBL
KEGG Report	rno:100188944	UniProtKB/TrEMBL
NCBI Gene	100188944	ENTREZGENE
Pfam	DUF4748	UniProtKB/TrEMBL
	HAGH_C	UniProtKB/TrEMBL
	Lactamase_B	UniProtKB/TrEMBL
PhenoGen	Pnkd	PhenoGen
SMART	Lactamase_B	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56281	UniProtKB/TrEMBL
TIGRFAMs	GSH_gloB	UniProtKB/TrEMBL
UniProt	A0A0G2K0M0_RAT	UniProtKB/TrEMBL
	A0A8I5YCF3_RAT	UniProtKB/TrEMBL
	B4F7D2	ENTREZGENE, UniProtKB/TrEMBL
	D3ZXB0	ENTREZGENE, UniProtKB/TrEMBL
	F1M1E4	ENTREZGENE, UniProtKB/TrEMBL
	M0RBK9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-03	Pnkd	PNKD metallo-beta-lactamase domain containing	Pnkd	PNKD, MBL domain containing	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2018-06-25	Pnkd	PNKD, MBL domain containing	Pnkd	paroxysmal nonkinesigenic dyskinesia	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-10	Pnkd	paroxysmal nonkinesigenic dyskinesia	Pnkd	paroxysmal nonkinesiogenic dyskinesia	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-06	Pnkd	paroxysmal nonkinesiogenic dyskinesia			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - CTD

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