Thoc2l (THO complex subunit 2-like) - Rat Genome Database

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Gene: Thoc2l (THO complex subunit 2-like) Mus musculus
Analyze
Symbol: Thoc2l
Name: THO complex subunit 2-like
RGD ID: 2299998
MGI Page MGI
Description: Predicted to enable mRNA binding activity. Predicted to be involved in neuron development and poly(A)+ mRNA export from nucleus. Predicted to be part of THO complex part of transcription export complex. Predicted to colocalize with chromosome, telomeric region. Is expressed in central nervous system and retina. Human ortholog(s) of this gene implicated in X-linked intellectual disability-short stature-overweight syndrome. Orthologous to human THOC2 (THO complex subunit 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 100041172; 1110004B06Rik; AI451450; BC005561; cDNA sequence BC005561; D930016D06Rik; Gm3179; hypothetical LOC243171; predicted gene 3179; RIKEN cDNA D930016D06 gene; THO complex 2-like; uncharacterized protein LOC100042165
RGD Orthologs
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395104,656,172 - 104,702,073 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5104,656,216 - 104,702,073 (+)EnsemblGRCm39 Ensembl
GRCm385104,508,350 - 104,554,207 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5104,525,735 - 104,554,207 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl5104,508,350 - 104,554,207 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl5104,508,352 - 104,522,611 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl5104,508,352 - 104,554,207 (+)EnsemblGRCm38mm10GRCm38
MGSCv375104,937,371 - 104,951,402 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365104,946,476 - 104,951,926 (+)NCBIMGSCv36mm8
Celera5101,811,588 - 101,834,536 (+)NCBICelera
Cytogenetic Map5E5NCBI
cM Map550.68NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
mRNA binding  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15582152   PMID:16141072   PMID:16141073   PMID:16602821   PMID:18799693  
PMID:21267068   PMID:21873635   PMID:24200680   PMID:27899360  


Genomics

Comparative Map Data
Thoc2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395104,656,172 - 104,702,073 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5104,656,216 - 104,702,073 (+)EnsemblGRCm39 Ensembl
GRCm385104,508,350 - 104,554,207 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5104,525,735 - 104,554,207 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl5104,508,350 - 104,554,207 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl5104,508,352 - 104,522,611 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl5104,508,352 - 104,554,207 (+)EnsemblGRCm38mm10GRCm38
MGSCv375104,937,371 - 104,951,402 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365104,946,476 - 104,951,926 (+)NCBIMGSCv36mm8
Celera5101,811,588 - 101,834,536 (+)NCBICelera
Cytogenetic Map5E5NCBI
cM Map550.68NCBI
Thoc2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8145,501,779 - 5,539,646 (-)NCBIGRCr8
mRatBN7.2145,197,093 - 5,234,960 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl145,197,003 - 5,235,453 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx145,158,050 - 5,196,086 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0146,458,248 - 6,496,282 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0145,152,543 - 5,190,446 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0146,561,962 - 6,601,906 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl146,581,983 - 6,587,141 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0146,541,300 - 6,580,604 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4146,329,697 - 6,347,161 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera145,336,614 - 5,376,553 (-)NCBICelera
Cytogenetic Map14p22NCBI

Variants

.
Variants in Thoc2l
342 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:190
Count of miRNA genes:179
Interacting mature miRNAs:187
Transcripts:ENSMUST00000096452
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
10043993Hbnr10_mHeligmosomoides bakeri nematode resistance 10 (mouse)Not determined572418876106419011Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575315348120018629Mouse
4141438Skmw13_mskeletal muscle weight 13 (mouse)Not determined576190263110190479Mouse
4141505Chlq14_mcirculating hormone level QTL 14 (mouse)Not determined576280786110280917Mouse
1300986Hdlq2_mHDL QTL 2 (mouse)Not determined576280786110280917Mouse
1301691Cdcs10_mcytokine deficiency colitis susceptibility 10 (mouse)Not determined576280786110280917Mouse
1301829Thyls2_mthymic lymphoma susceptibility 2 (mouse)Not determined576445064110445225Mouse
1301713Dbsty2_mdiabesity 2 (mouse)Not determined576445064110445225Mouse
13464249Ahl16_mage related hearing loss, early onset 16 (mouse)576445064110445225Mouse
1300931Cocrb6_mcocaine related behavior 6 (mouse)Not determined576445064110445225Mouse
10401246Bglu13_mblood glucose level 13 (mouse)Not determined579539640113539786Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580849259114849259Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined581019649115019803Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582838468116838597Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582838468116838597Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587386871121387065Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587386871121387065Mouse
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587386871121387065Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
10045978Tir10_mtrypanosome infection response 10 (mouse)Not determined598019649114021986Mouse
1301042Elmaz1_melevated maze behavior 1 (mouse)Not determined598019649116876624Mouse
1301877Bbaa3_mB.burgdorferi-associated arthritis 3 (mouse)Not determined599455285112465722Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
25314317Sccor3_msynaptonemal complex length to mean MLH1 count ratio 3 (mouse)5104347866114738061Mouse
11528550Sluc33_msusceptibility to lung cancer 33 (mouse)5104386871120711986Mouse
1357886Diht_mdopamine-induced hypothermia (mouse)Not determined5104498738115101540Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse

Markers in Region
AF014010  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385104,503,708 - 104,503,805UniSTSGRCm38
MGSCv375104,932,727 - 104,932,824UniSTSGRCm37
Celera5101,815,707 - 101,815,807UniSTS
Cytogenetic Map5E5UniSTS
cM Map555.0UniSTS
Whitehead/MRC_RH51236.44UniSTS
RH141583  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385104,505,513 - 104,505,688UniSTSGRCm38
MGSCv375104,934,532 - 104,934,707UniSTSGRCm37
Celera5101,817,531 - 101,817,707UniSTS
Cytogenetic Map5E5UniSTS
cM Map555.0UniSTS
Pkd2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385104,502,346 - 104,503,572UniSTSGRCm38
MGSCv375104,931,365 - 104,932,591UniSTSGRCm37
Celera5101,814,345 - 101,815,571UniSTS
Cytogenetic Map5E5UniSTS
cM Map555.0UniSTS
cM Map555.0UniSTS
cM Map555.0UniSTS
Pkd2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385104,505,003 - 104,505,130UniSTSGRCm38
MGSCv375104,934,022 - 104,934,149UniSTSGRCm37
Celera5101,817,021 - 101,817,148UniSTS
Cytogenetic Map5E5UniSTS
Pkd2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385104,504,825 - 104,504,923UniSTSGRCm38
MGSCv375104,933,844 - 104,933,942UniSTSGRCm37
Celera5101,816,843 - 101,816,941UniSTS
Cytogenetic Map5E5UniSTS
cM Map555.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001166581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_164628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC082597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN457361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY468051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000096452   ⟹   ENSMUSP00000130629
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5104,656,218 - 104,670,249 (+)Ensembl
GRCm38.p6 Ensembl5104,508,352 - 104,522,383 (+)Ensembl
RefSeq Acc Id: ENSMUST00000181418
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5104,688,437 - 104,699,940 (+)Ensembl
GRCm38.p6 Ensembl5104,540,571 - 104,552,074 (+)Ensembl
RefSeq Acc Id: ENSMUST00000181620
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5104,673,601 - 104,702,073 (+)Ensembl
GRCm38.p6 Ensembl5104,525,735 - 104,554,207 (+)Ensembl
RefSeq Acc Id: ENSMUST00000196593
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5104,689,049 - 104,699,347 (+)Ensembl
GRCm38.p6 Ensembl5104,541,183 - 104,551,481 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197606
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5104,671,543 - 104,702,073 (+)Ensembl
GRCm38.p6 Ensembl5104,523,677 - 104,554,207 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5104,673,735 - 104,687,192 (+)Ensembl
GRCm38.p6 Ensembl5104,525,869 - 104,539,326 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239307   ⟹   ENSMUSP00000159241
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5104,656,216 - 104,702,073 (+)Ensembl
GRCm38.p6 Ensembl5104,508,350 - 104,554,207 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239420   ⟹   ENSMUSP00000159295
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5104,656,216 - 104,702,073 (+)Ensembl
GRCm38.p6 Ensembl5104,508,350 - 104,554,207 (+)Ensembl
RefSeq Acc Id: NM_001166581   ⟹   NP_001160053
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395104,656,216 - 104,702,073 (+)NCBI
GRCm385104,508,350 - 104,554,207 (+)NCBI
MGSCv375104,937,371 - 104,951,402 (+)RGD
Celera5101,811,588 - 101,834,536 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_164628
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395104,656,216 - 104,702,073 (+)NCBI
GRCm385104,508,350 - 104,554,207 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164672   ⟹   XP_036020565
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395104,656,172 - 104,702,073 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164673   ⟹   XP_036020566
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395104,656,172 - 104,702,073 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164674   ⟹   XP_036020567
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395104,656,172 - 104,702,073 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164675   ⟹   XP_036020568
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395104,656,172 - 104,702,073 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164676   ⟹   XP_036020569
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395104,656,172 - 104,702,073 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164677   ⟹   XP_036020570
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395104,656,172 - 104,702,073 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164678   ⟹   XP_036020571
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395104,656,172 - 104,702,073 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164679   ⟹   XP_036020572
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395104,656,172 - 104,702,073 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001160053   ⟸   NM_001166581
- UniProtKB: E9Q5E2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000159295   ⟸   ENSMUST00000239420
RefSeq Acc Id: ENSMUSP00000159241   ⟸   ENSMUST00000239307
RefSeq Acc Id: ENSMUSP00000130629   ⟸   ENSMUST00000096452
RefSeq Acc Id: XP_036020568   ⟸   XM_036164675
- Peptide Label: isoform X1
- UniProtKB: E9Q5E2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020571   ⟸   XM_036164678
- Peptide Label: isoform X1
- UniProtKB: E9Q5E2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020572   ⟸   XM_036164679
- Peptide Label: isoform X1
- UniProtKB: E9Q5E2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020569   ⟸   XM_036164676
- Peptide Label: isoform X1
- UniProtKB: E9Q5E2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020566   ⟸   XM_036164673
- Peptide Label: isoform X1
- UniProtKB: E9Q5E2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020565   ⟸   XM_036164672
- Peptide Label: isoform X1
- UniProtKB: E9Q5E2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020570   ⟸   XM_036164677
- Peptide Label: isoform X1
- UniProtKB: E9Q5E2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020567   ⟸   XM_036164674
- Peptide Label: isoform X1
- UniProtKB: E9Q5E2 (UniProtKB/TrEMBL)
Protein Domains
THO complex subunit 2 N-terminal   THO complex subunitTHOC2 C-terminal   THO complex subunitTHOC2 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9Q5E2-F1-model_v2 AlphaFold E9Q5E2 1-1589 view protein structure

Promoters
RGD ID:6887360
Promoter ID:EPDNEW_M7131
Type:initiation region
Name:BC005561_1
Description:Mus musculus cDNA sequence BC005561 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385104,508,352 - 104,508,412EPDNEW
RGD ID:6837162
Promoter ID:MM_KWN:43159
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   MEF_B4,   MEF_B6
Transcripts:NM_001166581
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365104,936,441 - 104,937,492 (+)MPROMDB
RGD ID:6837164
Promoter ID:MM_KWN:43160
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NR_024083_BC005561,   NR_024083_BC005561.1,   XM_001475917_GM3179
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365104,951,341 - 104,951,841 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3040669 AgrOrtholog
Ensembl Genes ENSMUSG00000079065 Ensembl
  ENSMUSG00000097392 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000096452 ENTREZGENE
  ENSMUST00000096452.7 UniProtKB/TrEMBL
  ENSMUST00000239307.3 UniProtKB/TrEMBL
  ENSMUST00000239420 ENTREZGENE
  ENSMUST00000239420.2 UniProtKB/TrEMBL
InterPro Tho2 UniProtKB/TrEMBL
  THO_THOC2_C UniProtKB/TrEMBL
  THO_THOC2_N UniProtKB/TrEMBL
  THOC2_N UniProtKB/TrEMBL
KEGG Report mmu:100042165 UniProtKB/TrEMBL
MGD MGI:3040669 ENTREZGENE
NCBI Gene 100042165 ENTREZGENE
PANTHER PTHR21597 UniProtKB/TrEMBL
  THO COMPLEX SUBUNIT 2 UniProtKB/TrEMBL
Pfam Tho2 UniProtKB/TrEMBL
  Thoc2 UniProtKB/TrEMBL
  THOC2_N UniProtKB/TrEMBL
PhenoGen Thoc2l PhenoGen
UniProt E9Q5E2 ENTREZGENE, UniProtKB/TrEMBL
  Q3TPY8_MOUSE UniProtKB/TrEMBL
  Q3US26_MOUSE UniProtKB/TrEMBL
  Q3UYT9_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-10-01 Thoc2l  THO complex subunit 2-like  BC005561  cDNA sequence BC005561  Symbol and/or name change 5135510 APPROVED
2019-09-26 BC005561  cDNA sequence BC005561  D930016D06Rik  RIKEN cDNA D930016D06 gene  Data merged from RGD:1619915 737654 PROVISIONAL
2016-04-05 D930016D06Rik  RIKEN cDNA D930016D06 gene  Gm3179  predicted gene 3179  Data merged from RGD:2307718 737654 PROVISIONAL