Gm8539 (predicted gene 8539) - Rat Genome Database

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Gene: Gm8539 (predicted gene 8539) Mus musculus
Analyze
Symbol: Gm8539
Name: predicted gene 8539
RGD ID: 2299852
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 667253; predicted gene, 667253
Related Functional Gene: Zbtb8os  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39521,816,767 - 21,819,557 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl521,818,992 - 21,819,492 (-)EnsemblGRCm39 Ensembl
GRCm38521,611,769 - 21,614,559 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl521,613,994 - 21,614,494 (-)EnsemblGRCm38mm10GRCm38
MGSCv37521,119,809 - 21,120,348 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36521,121,492 - 21,126,480 (-)NCBIMGSCv36mm8
Celera518,582,469 - 18,583,036 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map59.97NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm8539
143 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301468Eye1_meye weight 1 (mouse)Not determined5121929650Mouse
10412081Bwq13_mbody weight QTL 13 (mouse)Not determined5123606323Mouse
12904958Gmmq8_mgastrocnemius muscle mass QTL 8 (mouse)5129421124Mouse
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
7394748Mom5_mmodifier of Min 5 (mouse)Not determined5884767233475637Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
13432187Actdse1_mactivity chamber total difference saline/ethanol 1 (mouse)51819918023099180Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse

Markers in Region
AI851226  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38521,613,967 - 21,614,086UniSTSGRCm38
MGSCv37521,119,785 - 21,119,904UniSTSGRCm37
Celera518,582,465 - 18,582,584UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map5A3UniSTS
Whitehead/MRC_RH5236.95UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000199822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl521,818,992 - 21,819,492 (-)Ensembl
GRCm38.p6 Ensembl521,613,994 - 21,614,494 (-)Ensembl
RefSeq Acc Id: XM_001001111   ⟹   XP_001001111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38521,613,795 - 21,614,551 (-)NCBI
MGSCv37521,119,809 - 21,120,348 (-)RGD
cM Map5 ENTREZGENE
RefSeq Acc Id: XM_003086428   ⟹   XP_003086476
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera518,582,293 - 18,583,049 (-)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000106294 Ensembl
MGD MGI:3779802 ENTREZGENE
NCBI Gene Gm8539 ENTREZGENE
PhenoGen Gm8539 PhenoGen