Krtap10-21 (keratin associated protein 10-21) - Rat Genome Database

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Gene: Krtap10-21 (keratin associated protein 10-21) Mus musculus
Analyze
No known orthologs.
Symbol: Krtap10-21
Name: keratin associated protein 10-21
RGD ID: 2299330
MGI Page MGI
Description: Predicted to enable identical protein binding activity. Orthologous to several human genes including KRTAP10-3 (keratin associated protein 10-3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 100041250; Gm3233; hypothetical protein LOC100041250; keratin-associated protein 10-8; predicted gene, 100041250; predicted protein 3233
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391077,594,551 - 77,595,672 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1077,594,824 - 77,595,516 (-)EnsemblGRCm39 Ensembl
GRCm381077,758,717 - 77,759,838 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1077,758,990 - 77,759,682 (-)EnsemblGRCm38mm10GRCm38
MGSCv371077,221,735 - 77,222,427 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361077,221,462 - 77,222,427 (-)NCBIMGSCv36mm8
Celera1078,803,383 - 78,804,075 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Krtap10-21
18 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:175
Count of miRNA genes:165
Interacting mature miRNAs:174
Transcripts:ENSMUST00000168997
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7398721682491121Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse

Markers in Region
AA589524  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371077,316,328 - 77,316,416UniSTSGRCm37
Celera1078,899,304 - 78,899,392UniSTS
Cytogenetic Map10C1UniSTS
cM Map10 UniSTS
Whitehead/MRC_RH10878.6UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000168997   ⟹   ENSMUSP00000129915
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,594,824 - 77,595,516 (-)Ensembl
GRCm38.p6 Ensembl1077,758,990 - 77,759,682 (-)Ensembl
RefSeq Acc Id: NM_001370831   ⟹   NP_001357760
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,594,551 - 77,595,672 (-)NCBI
GRCm381077,758,717 - 77,759,838 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001357760 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL31786 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000129915
  ENSMUSP00000129915.2
RefSeq Acc Id: NP_001357760   ⟸   NM_001370831
- UniProtKB: E9Q2H5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000129915   ⟸   ENSMUST00000168997

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9Q2H5-F1-model_v2 AlphaFold E9Q2H5 1-230 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3781411 AgrOrtholog
Ensembl Genes ENSMUSG00000094120 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000168997 ENTREZGENE
  ENSMUST00000168997.2 UniProtKB/TrEMBL
InterPro Keratin_B2 UniProtKB/TrEMBL
MGD MGI:3781411 ENTREZGENE
NCBI Gene 100041250 ENTREZGENE
PANTHER KERATIN-ASSOCIATED PROTEIN 10-6 UniProtKB/TrEMBL
  Keratin_B2 UniProtKB/TrEMBL
Pfam Keratin_B2_2 UniProtKB/TrEMBL
PhenoGen Krtap10-21 PhenoGen
UniProt E9Q2H5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-02-19 Krtap10-21  keratin associated protein 10-21  Gm3233  predicted gene 3233  Symbol and/or name updated 27372883 PROVISIONAL