Arl4aos (ADP-ribosylation factor-like 4A, opposite strand) - Rat Genome Database

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Gene: Arl4aos (ADP-ribosylation factor-like 4A, opposite strand) Mus musculus
Analyze
Symbol: Arl4aos
Name: ADP-ribosylation factor-like 4A, opposite strand
RGD ID: 2299322
MGI Page MGI
Description: INTERACTS WITH aldehydo-D-glucose; D-glucose; fructose
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 100043606; 4930555J06Rik; Gm4547; hypothetical protein LOC100043606; predicted gene 4547; RIKEN cDNA 4930555J06 gene
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391240,088,076 - 40,091,297 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1240,088,098 - 40,090,026 (+)EnsemblGRCm39 Ensembl
GRCm381240,038,077 - 40,041,298 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1240,038,099 - 40,040,027 (+)EnsemblGRCm38mm10GRCm38
MGSCv371240,764,917 - 40,766,624 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361240,764,917 - 40,766,624 (+)NCBIMGSCv36mm8
Celera1241,466,445 - 41,470,919 (+)NCBICelera
Cytogenetic Map12B1NCBI
cM Map1218.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24200680   PMID:24316575   PMID:27899360  


Genomics

Variants

.
Variants in Arl4aos
116 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:107
Interacting mature miRNAs:108
Transcripts:ENSMUST00000135883
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
12879483Asp1_maudiogenic seizure prone 1 (mouse)123528549646801733Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000135883
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1240,088,098 - 40,090,026 (+)Ensembl
GRCm38.p6 Ensembl1240,038,099 - 40,040,027 (+)Ensembl
RefSeq Acc Id: NR_166749
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391240,088,076 - 40,091,297 (+)NCBI
GRCm381240,038,077 - 40,041,298 (+)NCBI
Sequence:
RefSeq Acc Id: NR_166751
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391240,088,076 - 40,090,038 (+)NCBI
GRCm381240,038,077 - 40,040,039 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein EDL36828 (Get FASTA)   NCBI Sequence Viewer  

Promoters
RGD ID:15094089
Promoter ID:EPDNEWNC_M2008
Type:initiation region
Name:Arl4aos_1
Description:ADP-ribosylation factor-like 4A, opposite strand[Source:MGI Symbol;Acc:MGI:2151103]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381240,038,077 - 40,038,137EPDNEWNC
RGD ID:8678186
Promoter ID:EPDNEW_M17124
Type:initiation region
Name:AK016131_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381240,038,077 - 40,038,137EPDNEW
RGD ID:6822737
Promoter ID:MM_KWN:11541
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000051616,   OTTMUST00000082135,   OTTMUST00000082154,   OTTMUST00000082155,   OTTMUST00000082156,   OTTMUST00000082157,   UC007NKR.1,   XM_001480837_GM4547
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361240,762,891 - 40,764,857 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086315 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000135883 ENTREZGENE
MGD MGI:2151103 ENTREZGENE
NCBI Gene 100043606 ENTREZGENE
PhenoGen Arl4aos PhenoGen
RNAcentral URS000198129E RNACentral
  URS00019812F5 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-04 Arl4aos  ADP-ribosylation factor-like 4A, opposite strand  Gm4547  predicted gene 4547  Symbol and/or name change 5135510 APPROVED
2016-03-29 Gm4547  predicted gene 4547  4930555J06Rik  RIKEN cDNA 4930555J06 gene  Data merged from RGD:1607775 737654 PROVISIONAL