Gm3336 (predicted gene 3336) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Gm3336 (predicted gene 3336) Mus musculus
Analyze
Symbol: Gm3336
Name: predicted gene 3336
RGD ID: 2299258
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 100041434; 2410018E23Rik; hypothetical protein LOC100041434; uncharacterized protein LOC100041434; uncharacterized protein LOC100502950
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,171,144 - 71,175,284 (+)NCBIGRCm39mm39
GRCm38870,718,495 - 70,722,635 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,718,543 - 70,722,634 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,242,448 - 73,246,531 (+)NCBIGRCm37mm9NCBIm37
MGSCv36873,242,442 - 73,246,534 (+)NCBImm8
Celera873,275,047 - 73,279,307 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:235
Count of miRNA genes:208
Interacting mature miRNAs:221
Transcripts:ENSMUST00000179347
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000179347   ⟹   ENSMUSP00000136399
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,718,543 - 70,722,632 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213065   ⟹   ENSMUSP00000148772
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,718,543 - 70,722,634 (+)Ensembl
RefSeq Acc Id: NM_001195253   ⟹   NP_001182182
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,171,192 - 71,175,284 (+)NCBI
GRCm38870,718,543 - 70,722,635 (+)NCBI
Celera873,275,041 - 73,279,307 (+)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017312493   ⟹   XP_017167982
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,171,144 - 71,175,280 (+)NCBI
GRCm38870,718,495 - 70,722,632 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001182182 (Get FASTA)   NCBI Sequence Viewer  
  XP_017167982 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001182182   ⟸   NM_001195253
- Peptide Label: precursor
- UniProtKB: J3QMQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017167982   ⟸   XM_017312493
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000136399   ⟸   ENSMUST00000179347
RefSeq Acc Id: ENSMUSP00000148772   ⟸   ENSMUST00000213065

Promoters
RGD ID:8667337
Promoter ID:EPDNEW_M11700
Type:multiple initiation site
Name:Gm3336_1
Description:Mus musculus predicted gene 3336 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38870,718,543 - 70,718,603EPDNEW
RGD ID:6843226
Promoter ID:MM_KWN:54731
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Lung
Transcripts:AK010542_2410018E23RIK,   LINCRNA_1012,   UC009MBF.1,   XM_001476374_GM3336
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36873,241,936 - 73,242,436 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3781514 AgrOrtholog
Ensembl Genes ENSMUSG00000095026 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000136399 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000148772 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000179347 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000213065 UniProtKB/TrEMBL
KEGG Report mmu:100502950 UniProtKB/TrEMBL
MGD MGI:3781514 ENTREZGENE
NCBI Gene Gm3336 ENTREZGENE
PhenoGen Gm3336 PhenoGen
UniGene Mm.52981 ENTREZGENE
UniProt A0A1D5RMG6_MOUSE UniProtKB/TrEMBL
  J3QMQ6 ENTREZGENE, UniProtKB/TrEMBL