Gm4707 (predicted gene 4707) - Rat Genome Database

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Gene: Gm4707 (predicted gene 4707) Mus musculus
Analyze
Symbol: Gm4707
Name: predicted gene 4707
RGD ID: 2299234
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 100043879; predicted gene, 100043879
Related Functional Gene: Atp5f1b  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391771,765,173 - 71,766,894 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1771,765,298 - 71,766,913 (-)EnsemblGRCm39 Ensembl
GRCm381771,458,178 - 71,459,899 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1771,458,327 - 71,459,918 (-)EnsemblGRCm38mm10GRCm38
MGSCv371771,807,516 - 71,808,145 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv371771,807,516 - 71,808,145 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361771,807,516 - 71,808,145 (-)NCBIMGSCv36mm8
Celera1775,728,550 - 75,730,271 (-)NCBICelera
Cytogenetic Map17E1.3NCBI
cM Map1741.87NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in Gm4707
68 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:360
Count of miRNA genes:281
Interacting mature miRNAs:306
Transcripts:ENSMUST00000171504, ENSMUST00000180522, ENSMUST00000183937
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173871288772712970Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173880562672805626Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173880562672805626Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4053444774534623Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174093918774939187Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174651092682407429Mouse
1357754Ahl3_mage related hearing loss 3 (mouse)Not determined175020395784204103Mouse
4141879Chlq9_mcirculating hormone level QTL 9 (mouse)Not determined175175842585758612Mouse
1357532Bmch7_mbone mechanical trait 7 (mouse)Not determined175175842585758612Mouse
1357447Heal13_mwound healing/regeneration 13 (mouse)Not determined175710765191107803Mouse
4141758Pstc5_mperiosteal circumference 5 (mouse)Not determined175710765191107803Mouse
4141011Bmd26_mbone mineral density 26 (mouse)Not determined175710765191107803Mouse
1300735Pgia20_mproteoglycan induced arthritis 20 (mouse)Not determined175710765191107803Mouse
12910536Nrq8a_mnoise-induced hearing loss resistant QTL 8a (mouse)175710765191107803Mouse
12910537Nrq8_mnoise-induced hearing loss resistant QTL 8 (mouse)175710765191107803Mouse
4142201Obrq15_mobesity resistance QTL 15 (mouse)Not determined5753444780885776Mouse
4142414Pregq4_mpregnancy QTL 4 (mouse)Not determined175753444793507179Mouse
4141040Hmtb9_mhemostasis and thrombosis rebleeding time 9 (mouse)Not determined5758908991589197Mouse
1301107Scc4_mcolon tumor susceptibility 4 (mouse)Not determined176230101095294699Mouse
11528551Sluc32_msusceptibility to lung cancer 32 (mouse)176230101095294699Mouse
1302017Aliq3_macute lung injury QTL 3 (mouse)Not determined176388554895294699Mouse
1301728Ffal1_mfree fatty acid level 1 (mouse)Not determined176521493895294699Mouse
14928308Manh82_mmandible shape 82 (mouse)176631524395294699Mouse
13464254Ifvrq3_minfluenza virus resistance QTL 3 (mouse)176795765583908089Mouse
4142256Nilac12_mnicotine induced locomotor activity 12 (mouse)Not determined176894131995294699Mouse
11039500Ltpr7c_mLeishmania tropica response 7c (mouse)177070119895294699Mouse
11039498Ltpr7b_mLeishmania tropica response 7b (mouse)177070119895294699Mouse
11039499Ltpr7a_mLeishmania tropica response 7a (mouse)177070119895294699Mouse
11039514Ltpr7_mLeishmania tropica response 7 (mouse)177070119895294699Mouse
11565819Ppipq1_mprepulse inhibition percentage QTL 1 (mouse)177105765575377655Mouse

Markers in Region
AW549786  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381771,458,380 - 71,458,468UniSTSGRCm38
GRCm3810128,089,115 - 128,090,063UniSTSGRCm38
MGSCv371771,807,720 - 71,807,808UniSTSGRCm37
MGSCv3710127,526,171 - 127,527,119UniSTSGRCm37
Celera1775,728,752 - 75,728,840UniSTS
Celera10130,483,851 - 130,484,799UniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map10D3UniSTS
Whitehead/MRC_RH17832.51UniSTS
D17Wsu164e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381771,458,201 - 71,458,436UniSTSGRCm38
MGSCv371771,807,541 - 71,807,776UniSTSGRCm37
Celera1775,728,573 - 75,728,808UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17E1.3UniSTS
cM Map1742.5UniSTS
ATP5B  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381771,459,426 - 71,459,562UniSTSGRCm38
GRCm3810128,084,331 - 128,084,467UniSTSGRCm38
MGSCv371771,808,766 - 71,808,902UniSTSGRCm37
MGSCv3710127,521,387 - 127,521,523UniSTSGRCm37
Celera1775,729,798 - 75,729,934UniSTS
Celera10130,479,068 - 130,479,204UniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map10D3UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000171504
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1771,765,298 - 71,766,913 (-)Ensembl
GRCm38.p6 Ensembl1771,458,327 - 71,459,918 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183937   ⟹   ENSMUSP00000139241
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1771,459,025 - 71,459,300 (-)Ensembl
RefSeq Acc Id: XM_001481180   ⟹   XP_001481230
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv371771,807,516 - 71,808,145 (-)RGD

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000091831 Ensembl, ENTREZGENE
MGD MGI:3782887 ENTREZGENE
NCBI Gene Gm4707 ENTREZGENE
PhenoGen Gm4707 PhenoGen