GOLGA8IP (golgin A8 family member I, pseudogene) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: GOLGA8IP (golgin A8 family member I, pseudogene) Homo sapiens
Analyze
No known orthologs.
Symbol: GOLGA8IP
Name: golgin A8 family member I, pseudogene
RGD ID: 2299191
HGNC Page HGNC:26660
Description: Predicted to be involved in Golgi organization. Predicted to be located in Golgi apparatus and membrane. Predicted to be active in Golgi cis cisterna; Golgi cisterna membrane; and cis-Golgi network.
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: FLJ35785; GOLGA8I; GOLGA9P
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381522,610,353 - 22,617,854 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1522,607,540 - 22,617,756 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl1522,610,353 - 22,617,854 (-)EnsemblGRCh38hg38GRCh38
GRCh371523,255,242 - 23,262,743 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361520,806,683 - 20,819,025 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map15q11.2NCBI
HuRef158,042,154 - 8,046,506 (+)NCBIHuRef
CHM1_11523,204,478 - 23,211,983 (+)NCBICHM1_1
T2T-CHM13v2.01520,282,465 - 20,289,966 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:16572171   PMID:21873635  


Genomics

Variants

.
Variants in GOLGA8IP
2 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 5 1 94 2
Low 22 58 435 8 45 9 357 22 314 26 393 375 221 188
Below cutoff 2124 2310 991 373 780 226 3688 2006 3125 135 721 1027 155 965 2453 4

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000340249
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1522,610,353 - 22,617,854 (-)Ensembl
RefSeq Acc Id: ENST00000611635
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1522,607,540 - 22,617,756 (-)Ensembl
RefSeq Acc Id: ENST00000647991
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1522,606,022 - 22,608,126 (-)Ensembl
RefSeq Acc Id: NR_024074
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381522,610,353 - 22,617,854 (-)NCBI
GRCh371523,255,242 - 23,262,743 (+)RGD
HuRef158,042,154 - 8,046,506 (+)RGD
CHM1_11523,204,478 - 23,211,983 (+)NCBI
T2T-CHM13v2.01520,282,465 - 20,289,966 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein A6NC78 (Get FASTA)   NCBI Sequence Viewer  
  BAC04058 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A6NC78-F1-model_v2 AlphaFold A6NC78 1-632 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:26660 AgrOrtholog
COSMIC GOLGA8IP COSMIC
Ensembl Genes ENSG00000277561 Ensembl
  ENSG00000291004 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000340249 ENTREZGENE
GTEx ENSG00000277561 GTEx
  ENSG00000291004 GTEx
HGNC ID HGNC:26660 ENTREZGENE
Human Proteome Map GOLGA8IP Human Proteome Map
InterPro GM130_C UniProtKB/Swiss-Prot
  GOLGA_cons_dom UniProtKB/Swiss-Prot
  Golgin_A UniProtKB/Swiss-Prot
NCBI Gene 283796 ENTREZGENE
PANTHER GOLGIN SUBFAMILY A MEMBER 8H-RELATED UniProtKB/Swiss-Prot
  PTHR10881 UniProtKB/Swiss-Prot
Pfam GM130_C UniProtKB/Swiss-Prot
  GOLGA2L5 UniProtKB/Swiss-Prot
UniProt A6NC78 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 GOLGA8IP  golgin A8 family member I, pseudogene    golgin A8 family, member I, pseudogene  Symbol and/or name change 5135510 APPROVED
2014-10-15 GOLGA8IP  golgin A8 family, member I, pseudogene  GOLGA8I  golgin A8 family, member I  Symbol and/or name change 5135510 APPROVED
2012-10-09 GOLGA8I  golgin A8 family, member I  GOLGA8IP  golgin A8 family, member I, pseudogene  Symbol and/or name change 5135510 APPROVED
2011-07-27 GOLGA8IP  golgin A8 family, member I, pseudogene  GOLGA9P  golgi autoantigen, golgin subfamily a, 9 pseudogene  Symbol and/or name change 5135510 APPROVED