Gm11953 (predicted gene 11953) - Rat Genome Database

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Gene: Gm11953 (predicted gene 11953) Mus musculus
Analyze
Symbol: Gm11953
Name: predicted gene 11953
RGD ID: 2295865
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Gapdh  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,901,696 - 3,902,902 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,901,714 - 3,902,716 (+)EnsemblGRCm39 Ensembl
GRCm38113,951,696 - 3,952,902 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,951,714 - 3,952,716 (+)EnsemblGRCm38mm10GRCm38
MGSCv37113,851,667 - 3,852,905 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36113,851,680 - 3,852,763 (+)NCBIMGSCv36mm8
Celera114,446,797 - 4,448,035 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.78NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16944949  


Genomics

Variants

.
Variants in Gm11953
38 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:180
Count of miRNA genes:168
Interacting mature miRNAs:173
Transcripts:ENSMUST00000122352
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_007848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL807395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000122352
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,901,714 - 3,902,716 (+)Ensembl
GRCm38.p6 Ensembl113,951,714 - 3,952,716 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000082816 Ensembl, ENTREZGENE
MGD MGI:3649564 ENTREZGENE
NCBI Gene 100041720 ENTREZGENE
PhenoGen Gm11953 PhenoGen