Zfp1003 (zinc finger protein 1003) - Rat Genome Database

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Gene: Zfp1003 (zinc finger protein 1003) Mus musculus
Analyze
Symbol: Zfp1003 (Ensembl: Gm14327)
Name: zinc finger protein 1003 (Ensembl:predicted gene 14327)
RGD ID: 2295664
MGI Page MGI
Description: ASSOCIATED WITH genetic disease (ortholog); INTERACTS WITH acrylamide (ortholog)
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: PROVISIONAL
Previously known as: Gm14327
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392177,538,956 - 177,569,643 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2177,538,889 - 177,551,310 (+)EnsemblGRCm39 Ensembl
GRCm382177,897,163 - 177,927,850 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2177,897,096 - 177,905,784 (+)EnsemblGRCm38mm10GRCm38
MGSCv372177,631,878 - 177,642,228 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362177,826,520 - 177,836,931 (+)NCBIMGSCv36mm8
Celera2182,103,980 - 182,175,050 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map299.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
acrylamide  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:18799693  


Genomics

Comparative Map Data
Zfp1003
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392177,538,956 - 177,569,643 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2177,538,889 - 177,551,310 (+)EnsemblGRCm39 Ensembl
GRCm382177,897,163 - 177,927,850 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2177,897,096 - 177,905,784 (+)EnsemblGRCm38mm10GRCm38
MGSCv372177,631,878 - 177,642,228 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362177,826,520 - 177,836,931 (+)NCBIMGSCv36mm8
Celera2182,103,980 - 182,175,050 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map299.57NCBI
ZNF625-ZNF20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381912,131,350 - 12,156,731 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1912,132,117 - 12,156,731 (-)EnsemblGRCh38hg38GRCh38
GRCh371912,242,165 - 12,267,546 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19p13.2NCBI
HuRef1911,817,141 - 11,842,604 (-)NCBIHuRef
CHM1_11912,241,975 - 12,267,359 (-)NCBICHM1_1
T2T-CHM13v2.01912,259,602 - 12,284,987 (-)NCBIT2T-CHM13v2.0
Zfp950l10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83184,610,644 - 184,622,332 (-)NCBIGRCr8
mRatBN7.23164,203,387 - 164,215,285 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1252,730,836 - 252,731,880 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03173,438,366 - 173,448,998 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1718,634,067 - 18,634,258 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03179,476,460 - 179,489,531 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map3q43NCBI

Variants

.
Variants in Zfp1003
233 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:255
Count of miRNA genes:193
Interacting mature miRNAs:204
Transcripts:ENSMUST00000099001, ENSMUST00000108935
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158078337178442452Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162433493181755017Mouse
1558991Tailq4_mtail length QTL 4 (mouse)Not determined2162736926178442452Mouse
1357435Epfq2_mepididymal fat pad weight QTL 2 (mouse)Not determined2162736926178442452Mouse
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163486407181755017Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163486407181755017Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164515154181755017Mouse
12738409Lfibq1_mliver fibrosis QTL 1 (mouse)2167716420179207088Mouse
12910811Pwbwq3_mpre-weaning body weight QTL 3 (mouse)2169794802178920791Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000099001   ⟹   ENSMUSP00000096599
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2177,538,948 - 177,551,310 (+)Ensembl
GRCm38.p6 Ensembl2177,904,285 - 177,904,683 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108935   ⟹   ENSMUSP00000104563
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2177,538,889 - 177,547,577 (+)Ensembl
GRCm38.p6 Ensembl2177,897,096 - 177,905,784 (+)Ensembl
RefSeq Acc Id: NR_038101
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392177,538,956 - 177,569,643 (+)NCBI
GRCm382177,897,163 - 177,927,850 (+)ENTREZGENE
Celera2182,103,980 - 182,175,050 (+)ENTREZGENE
cM Map2 ENTREZGENE
Sequence:
Protein Sequences
Ensembl Protein ENSMUSP00000096599.5
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000096599   ⟸   ENSMUST00000099001
RefSeq Acc Id: ENSMUSP00000104563   ⟸   ENSMUST00000108935

Promoters
RGD ID:6832453
Promoter ID:MM_KWN:33470
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000099001,   ENSMUST00000108935,   ENSMUST00000108936,   UC008OHE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362177,631,776 - 177,632,276 (+)MPROMDB
RGD ID:6880002
Promoter ID:EPDNEW_M3452
Type:initiation region
Name:Gm14327_1
Description:Mus musculus predicted gene 14327 , non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382177,897,136 - 177,897,196EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000074521 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000099001.5 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
MGD MGI:3652188 ENTREZGENE
NCBI Gene 665205 ENTREZGENE
PANTHER RIKEN CDNA 3300002I08 GENE-RELATED UniProtKB/TrEMBL
  ZNF44 PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
PhenoGen Zfp1003 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
UniProt F6QUW6_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-25 Zfp1003  zinc finger protein 1003  Gm14327  predicted gene 14327  Symbol and/or name updated 27372883 PROVISIONAL