Gm11942 (predicted gene 11942) - Rat Genome Database

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Gene: Gm11942 (predicted gene 11942) Mus musculus
Analyze
Symbol: Gm11942
Name: predicted gene 11942
RGD ID: 2295641
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: hypothetical protein LOC665298; predicted gene, OTTMUSG00000004999
Related Functional Gene: Rplp1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39432,964,806 - 32,965,273 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl432,964,888 - 32,965,232 (+)EnsemblGRCm39 Ensembl
GRCm38432,964,806 - 32,965,273 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl432,964,888 - 32,965,232 (+)EnsemblGRCm38mm10GRCm38
MGSCv37433,051,765 - 33,052,207 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36433,291,039 - 33,293,926 (+)NCBIMGSCv36mm8
Celera432,705,279 - 32,705,718 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map414.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14610273  


Genomics

Variants

.
Variants in Gm11942
16 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:65
Interacting mature miRNAs:66
Transcripts:ENSMUST00000180255
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1558992Ses8_msalmonella enteritidis susceptibility 8 (mouse)Not determined4868324042683429Mouse
4141302Ssrq5_mstress response QTL 5 (mouse)Not determined868324042683430Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
12880405Jcdq1_mjoint cartilage degeneration QTL 1 (mouse)41256237746562509Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
25440481Moaq1_mmodifier of alien QTL 1 (mouse)41950000046000000Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse
1302010Wta1_mweight adult 1 (mouse)Not determined4868324042683429Mouse
1301437Scon1_msucrose consumption 1 (mouse)Not determined42237344856373612Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse
1301473Triglq1_mtriglyceride QTL 1 (mouse)Not determined4868324042683429Mouse
1300769Pcyts2_mplasmacytoma susceptibility 2 (mouse)Not determined42211194456112145Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
1302058Hrtfm3_mheart failure modifier 3 (mouse)Not determined42211194456112145Mouse
1302184Aaom1_mautoimmune aoritis in MRL mice 1 (mouse)Not determined42432229946332776Mouse
1302125Lxw1_mlupus BXSB x NZW 1 (mouse)Not determined4868324042683429Mouse
12903995Opfaq2_mopen field activity QTL 2 (mouse)43034341933824057Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000180255
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl432,964,888 - 32,965,232 (+)Ensembl
GRCm38.p6 Ensembl432,964,888 - 32,965,232 (+)Ensembl
RefSeq Acc Id: XM_003086348
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera432,705,279 - 32,705,718 (+)RGD
RefSeq Acc Id: XM_975942
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv37433,051,765 - 33,052,207 (+)RGD
Protein Sequences
GenBank Protein EDL05498 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000094344 Ensembl
MGD MGI:3650608 ENTREZGENE
NCBI Gene 665298 ENTREZGENE
PhenoGen Gm11942 PhenoGen