Gm12371 (predicted gene 12371) - Rat Genome Database

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Gene: Gm12371 (predicted gene 12371) Mus musculus
Analyze
Symbol: Gm12371
Name: predicted gene 12371
RGD ID: 2295513
MGI Page MGI
Description: Is expressed in dorsal root ganglion.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39436,952,966 - 36,988,024 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl436,952,882 - 36,988,047 (+)EnsemblGRCm39 Ensembl
GRCm38436,952,966 - 36,988,024 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl436,952,966 - 36,988,032 (+)EnsemblGRCm38mm10GRCm38
MGSCv37436,899,999 - 36,935,061 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36436,899,999 - 36,935,061 (+)NCBIMGSCv36mm8
Celera436,649,875 - 36,684,937 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map419.88NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575   PMID:36417851  


Genomics

Variants

.
Variants in Gm12371
1220 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:67
Count of miRNA genes:66
Interacting mature miRNAs:67
Transcripts:ENSMUST00000144029
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1302010Wta1_mweight adult 1 (mouse)Not determined4868324042683429Mouse
1558992Ses8_msalmonella enteritidis susceptibility 8 (mouse)Not determined4868324042683429Mouse
1301473Triglq1_mtriglyceride QTL 1 (mouse)Not determined4868324042683429Mouse
1302125Lxw1_mlupus BXSB x NZW 1 (mouse)Not determined4868324042683429Mouse
4141302Ssrq5_mstress response QTL 5 (mouse)Not determined868324042683430Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
12880405Jcdq1_mjoint cartilage degeneration QTL 1 (mouse)41256237746562509Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
25440481Moaq1_mmodifier of alien QTL 1 (mouse)41950000046000000Mouse
1302058Hrtfm3_mheart failure modifier 3 (mouse)Not determined42211194456112145Mouse
1300769Pcyts2_mplasmacytoma susceptibility 2 (mouse)Not determined42211194456112145Mouse
1301437Scon1_msucrose consumption 1 (mouse)Not determined42237344856373612Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse
1302184Aaom1_mautoimmune aoritis in MRL mice 1 (mouse)Not determined42432229946332776Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
4142290Ssrq9_mstress response QTL 9 (mouse)Not determined3439516046332776Mouse
1301792Hdlq10_mHDL QTL 10 (mouse)Not determined43585970769859853Mouse
1300977Mopkd1_mmodifier of polycystic kidney disease progression 1 (mouse)Not determined43655083970550967Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000144029
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl436,952,882 - 36,988,047 (+)Ensembl
GRCm38.p6 Ensembl436,952,966 - 36,988,032 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241099
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl436,952,945 - 36,988,043 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242270
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl436,952,936 - 36,988,047 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242428
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl436,952,897 - 36,954,208 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl436,952,956 - 36,988,029 (+)Ensembl
RefSeq Acc Id: NR_151511
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39436,952,966 - 36,988,024 (+)NCBI
GRCm38436,952,966 - 36,988,024 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein EDL05451 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:15092672
Promoter ID:EPDNEWNC_M591
Type:multiple initiation site
Name:Gm12371_1
Description:predicted gene 12371 [Source:MGI Symbol;Acc:MGI:3652322]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38436,952,956 - 36,953,016EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000084898 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000144029 ENTREZGENE
MGD MGI:3652322 ENTREZGENE
NCBI Gene 100042132 ENTREZGENE
PhenoGen Gm12371 PhenoGen
RNAcentral URS0000CCE10A RNACentral