Gm15411 (predicted gene 15411) - Rat Genome Database

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Gene: Gm15411 (predicted gene 15411) Mus musculus
Analyze
Symbol: Gm15411
Name: predicted gene 15411
RGD ID: 2295362
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: hypothetical protein LOC100039964; uncharacterized protein Gm15411; uncharacterized protein LOC100039964
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395148,890,551 - 148,952,956 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5148,932,461 - 148,952,678 (-)EnsemblGRCm39 Ensembl
GRCm385148,953,741 - 149,015,880 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5148,995,651 - 149,015,813 (-)EnsemblGRCm38mm10GRCm38
MGSCv375149,810,721 - 149,827,387 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365149,810,721 - 149,827,387 (-)NCBIMGSCv36mm8
Celera5147,012,433 - 147,030,113 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map589.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in Gm15411
2218 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:89
Interacting mature miRNAs:91
Transcripts:ENSMUST00000133243
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse
11049557Lmr26_mleishmaniasis resistance 26 (mouse)5133925558151758149Mouse
13504735Ifvrq7_minfluenza virus resistance QTL 7 (mouse)5139509801151658149Mouse
13504737Ifvrq5_minfluenza virus resistance QTL 5 (mouse)5139509801151658149Mouse
13504734Ifvrq4_minfluenza virus resistance QTL 4 (mouse)5139985755151658149Mouse

Markers in Region
RH118298  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385149,013,954 - 149,014,125UniSTSGRCm38
MGSCv375149,825,530 - 149,825,701UniSTSGRCm37
Celera5147,028,180 - 147,028,351UniSTS
Cytogenetic Map5G3UniSTS
Whitehead/MRC_RH51766.75UniSTS
Whitehead/MRC_RH51763.92UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_003956010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_868717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_868719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_868720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_868721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000133243
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,932,461 - 148,952,623 (-)Ensembl
GRCm38.p6 Ensembl5148,995,651 - 149,015,813 (-)Ensembl
RefSeq Acc Id: ENSMUST00000201913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,935,152 - 148,952,594 (-)Ensembl
GRCm38.p6 Ensembl5148,998,342 - 149,015,784 (-)Ensembl
RefSeq Acc Id: ENSMUST00000202128
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,950,602 - 148,952,678 (-)Ensembl
GRCm38.p6 Ensembl5149,013,792 - 149,015,813 (-)Ensembl
RefSeq Acc Id: ENSMUST00000242293
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,935,950 - 148,952,621 (-)Ensembl
RefSeq Acc Id: ENSMUST00000242658
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,935,946 - 148,952,668 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245043
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,935,954 - 148,952,640 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245380
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,935,955 - 148,952,623 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,935,950 - 148,952,623 (-)Ensembl
RefSeq Acc Id: XR_003956010
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,895,402 - 148,907,119 (-)NCBI
GRCm385148,958,592 - 148,970,309 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003956012
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,895,696 - 148,952,956 (-)NCBI
GRCm385148,958,886 - 149,015,880 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003956013
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,895,696 - 148,952,956 (-)NCBI
GRCm385148,958,886 - 149,015,880 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003956014
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,895,696 - 148,908,568 (-)NCBI
GRCm385148,958,886 - 148,971,761 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003956016
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,890,551 - 148,952,953 (-)NCBI
GRCm385148,953,741 - 149,015,880 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003956017
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,934,989 - 148,937,774 (-)NCBI
GRCm385148,998,179 - 149,000,966 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942683
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,895,696 - 148,952,955 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942684
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,895,696 - 148,952,955 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942685
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,895,402 - 148,908,567 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942686
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,895,402 - 148,906,528 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942687
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,895,696 - 148,918,872 (-)NCBI
Sequence:
RefSeq Acc Id: XR_377237
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,890,551 - 148,896,711 (-)NCBI
GRCm385148,953,741 - 148,959,901 (-)NCBI
Sequence:
RefSeq Acc Id: XR_377241
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,895,402 - 148,908,566 (-)NCBI
GRCm385148,958,592 - 148,971,755 (-)NCBI
Sequence:
RefSeq Acc Id: XR_377243
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,935,957 - 148,940,389 (-)NCBI
GRCm385148,999,147 - 149,003,579 (-)NCBI
Sequence:
RefSeq Acc Id: XR_377244
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,936,018 - 148,943,552 (-)NCBI
GRCm385148,999,208 - 149,006,742 (-)NCBI
Sequence:
RefSeq Acc Id: XR_377254
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,895,402 - 148,897,752 (-)NCBI
GRCm385148,958,592 - 148,960,942 (-)NCBI
Sequence:
RefSeq Acc Id: XR_377255
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,895,402 - 148,896,711 (-)NCBI
GRCm385148,958,592 - 148,959,901 (-)NCBI
Sequence:
RefSeq Acc Id: XR_868717
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,890,551 - 148,896,711 (-)NCBI
GRCm385148,953,741 - 148,959,901 (-)NCBI
Sequence:
RefSeq Acc Id: XR_868719
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,936,018 - 148,941,006 (-)NCBI
GRCm385148,999,208 - 149,004,196 (-)NCBI
Sequence:
RefSeq Acc Id: XR_868720
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,936,018 - 148,939,941 (-)NCBI
GRCm385148,999,208 - 149,003,131 (-)NCBI
Sequence:
RefSeq Acc Id: XR_868721
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,890,551 - 148,952,955 (-)NCBI
GRCm385148,953,741 - 149,015,880 (-)NCBI
Sequence:
Promoters
RGD ID:6888848
Promoter ID:EPDNEW_M7875
Type:initiation region
Name:AK158390_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385149,015,862 - 149,015,922EPDNEW
RGD ID:15093006
Promoter ID:EPDNEWNC_M916
Type:single initiation site
Name:Gm15411_1
Description:predicted gene 15411 [Source:MGI Symbol;Acc:MGI:3705213]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385149,015,862 - 149,015,922EPDNEWNC
RGD ID:6837600
Promoter ID:MM_KWN:44940
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:AK158390_GM15411,   OTTMUST00000050273
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365149,827,231 - 149,827,731 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000085971 Ensembl
MGD MGI:3705213 ENTREZGENE
NCBI Gene 100039964 ENTREZGENE
PhenoGen Gm15411 PhenoGen