Gm6741 (predicted gene 6741) - Rat Genome Database

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Gene: Gm6741 (predicted gene 6741) Mus musculus
Analyze
No known orthologs.
Symbol: Gm6741
Name: predicted gene 6741
RGD ID: 2295309
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG627235
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Nanp  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391791,544,203 - 91,545,544 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1791,544,239 - 91,544,985 (+)EnsemblGRCm39 Ensembl
GRCm381791,236,775 - 91,238,116 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1791,236,811 - 91,237,557 (+)EnsemblGRCm38mm10GRCm38
MGSCv371791,636,127 - 91,637,478 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361791,145,106 - 91,146,457 (+)NCBIMGSCv36mm8
Celera1795,634,399 - 95,635,763 (+)NCBICelera
Cytogenetic Map17E5NCBI
cM Map1760.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm6741
49 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:115
Interacting mature miRNAs:119
Transcripts:ENSMUST00000057074
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301728Ffal1_mfree fatty acid level 1 (mouse)Not determined176521493895294699Mouse
1302017Aliq3_macute lung injury QTL 3 (mouse)Not determined176388554895294699Mouse
4141195Nilac11_mnicotine induced locomotor activity 11 (mouse)Not determined177339513295294699Mouse
4141040Hmtb9_mhemostasis and thrombosis rebleeding time 9 (mouse)Not determined5758908991589197Mouse
1357528Nhdlq3_mnon-HDL QTL 3 (mouse)Not determined177339513295294699Mouse
1301107Scc4_mcolon tumor susceptibility 4 (mouse)Not determined176230101095294699Mouse
4142256Nilac12_mnicotine induced locomotor activity 12 (mouse)Not determined176894131995294699Mouse
4141697Hbnr3_mHeligmosomoides bakeri nematode resistance 3 (mouse)Not determined7410765193507179Mouse
4142414Pregq4_mpregnancy QTL 4 (mouse)Not determined175753444793507179Mouse
11039498Ltpr7b_mLeishmania tropica response 7b (mouse)177070119895294699Mouse
11039500Ltpr7c_mLeishmania tropica response 7c (mouse)177070119895294699Mouse
11528551Sluc32_msusceptibility to lung cancer 32 (mouse)176230101095294699Mouse
11039499Ltpr7a_mLeishmania tropica response 7a (mouse)177070119895294699Mouse
11039514Ltpr7_mLeishmania tropica response 7 (mouse)177070119895294699Mouse
14928308Manh82_mmandible shape 82 (mouse)176631524395294699Mouse

Markers in Region
UniSTS:488753  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381791,236,791 - 91,238,055UniSTSGRCm38
MGSCv371791,636,131 - 91,637,395UniSTSGRCm37
Celera1795,634,403 - 95,635,683UniSTS
Cytogenetic Map17E5UniSTS
Cytogenetic Map2H1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000057074
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1791,544,239 - 91,544,985 (+)Ensembl
GRCm38.p6 Ensembl1791,236,811 - 91,237,557 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000043346 Ensembl
MGD MGI:3643504 ENTREZGENE
NCBI Gene 627235 ENTREZGENE
PhenoGen Gm6741 PhenoGen