Gm10282 (predicted pseudogene 10282) - Rat Genome Database
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Gene: Gm10282 (predicted pseudogene 10282) Mus musculus
Analyze
No known orthologs.
Symbol: Gm10282
Name: predicted pseudogene 10282
RGD ID: 2295259
MGI Page MGI
Description: Orthologous to human HMGN2 (high mobility group nucleosomal binding domain 2).
Type: pseudo
RefSeq Status: INFERRED
Also known as: ENSMUSG00000069996
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Hmgn2  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39873,057,952 - 73,059,154 (-)NCBIGRCm39mm39
GRCm38872,304,108 - 72,305,310 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,304,110 - 72,305,260 (-)EnsemblGRCm38mm10GRCm38
MGSCv37874,828,713 - 74,835,475 (-)NCBIGRCm37mm9NCBIm37
MGSCv36874,827,959 - 74,829,212 (-)NCBImm8
Celera876,642,255 - 76,642,715 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18799693  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:224
Count of miRNA genes:204
Interacting mature miRNAs:206
Transcripts:ENSMUST00000075602
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_031803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000075602   ⟹   ENSMUSP00000075031
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl872,304,110 - 72,305,260 (-)Ensembl
RefSeq Acc Id: XM_001478555
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv37874,828,713 - 74,835,475 (-)RGD
RefSeq Acc Id: XM_003086712
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera876,642,255 - 76,642,715 (-)RGD
Promoters
RGD ID:6843195
Promoter ID:MM_KWN:54864
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:XM_001478555_GM10282
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36874,829,011 - 74,829,511 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3704312 AgrOrtholog
Ensembl Genes ENSMUSG00000070713 Ensembl, ENTREZGENE
MGD MGI:3704312 ENTREZGENE
NCBI Gene 100042405 ENTREZGENE
PhenoGen Gm10282 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm10282  predicted pseudogene 10282  Gm10282  predicted gene 10282  Symbol and/or name change 5135510 APPROVED