Gm5911 (predicted gene 5911) - Rat Genome Database

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Gene: Gm5911 (predicted gene 5911) Mus musculus
Analyze
Symbol: Gm5911
Name: predicted gene 5911
RGD ID: 2294944
MGI Page MGI
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: EG546080
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,580,714 - 85,581,231 (-)NCBIGRCm39GRCm39mm39
GRCm38884,854,085 - 84,854,602 (-)NCBIGRCm38GRCm38mm10GRCm38
MGSCv37887,378,019 - 87,378,448 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36887,744,210 - 87,745,753 (-)NCBIMGSCv36mm8
Celera889,153,794 - 89,154,223 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:18799693  


Genomics

Variants

.
Variants in Gm5911
11 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88079340489740987Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85515925889159407Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85233484386334843Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85913640493136404Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85629887290298872Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85474046188740637Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86151347995513605Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7158942790929226Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide AC155163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Promoters
RGD ID:6843225
Promoter ID:MM_KWN:55101
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000109754,   NM_025648,   OTTMUST00000052996,   OTTMUST00000052997,   OTTMUST00000052998,   XR_031475_GM5911
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,380,721 - 87,381,221 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
MGD MGI:3645263 ENTREZGENE
NCBI Gene 546080 ENTREZGENE
PhenoGen Gm5911 PhenoGen