Gm13271 (predicted gene 13271) - Rat Genome Database

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Gene: Gm13271 (predicted gene 13271) Mus musculus
Analyze
Symbol: Gm13271
Name: predicted gene 13271
RGD ID: 2294846
MGI Page MGI
Description: Predicted to enable cytokine activity and type I interferon receptor binding activity. Predicted to be involved in several processes, including B cell activation; lymphocyte activation involved in immune response; and positive regulation of peptidyl-serine phosphorylation of STAT protein. Predicted to be active in extracellular space.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: If1ha1; Ifnz; interferon 1ha1; interferon zeta; interferon zeta-like
RGD Orthologs
Human
Bonobo
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39488,673,105 - 88,673,653 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl488,673,105 - 88,673,653 (+)EnsemblGRCm39 Ensembl
GRCm38488,754,868 - 88,755,416 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl488,754,868 - 88,755,416 (+)EnsemblGRCm38mm10GRCm38
MGSCv37488,400,772 - 88,401,320 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36488,226,099 - 88,226,647 (+)NCBIMGSCv36mm8
Celera487,265,377 - 87,265,925 (+)NCBICelera
Cytogenetic Map4C4NCBI
cM Map442.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10835682   PMID:11544103   PMID:15781341   PMID:21873635  


Genomics

Comparative Map Data
Gm13271
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39488,673,105 - 88,673,653 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl488,673,105 - 88,673,653 (+)EnsemblGRCm39 Ensembl
GRCm38488,754,868 - 88,755,416 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl488,754,868 - 88,755,416 (+)EnsemblGRCm38mm10GRCm38
MGSCv37488,400,772 - 88,401,320 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36488,226,099 - 88,226,647 (+)NCBIMGSCv36mm8
Celera487,265,377 - 87,265,925 (+)NCBICelera
Cytogenetic Map4C4NCBI
cM Map442.03NCBI
IFNW1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38921,140,632 - 21,141,832 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl921,140,632 - 21,141,832 (-)EnsemblGRCh38hg38GRCh38
GRCh37921,140,631 - 21,141,831 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36921,130,631 - 21,132,144 (-)NCBINCBI36Build 36hg18NCBI36
Build 34921,130,630 - 21,132,144NCBI
Celera921,078,911 - 21,080,424 (-)NCBICelera
Cytogenetic Map9p21.3NCBI
HuRef921,103,789 - 21,105,302 (-)NCBIHuRef
CHM1_1921,140,436 - 21,141,949 (-)NCBICHM1_1
T2T-CHM13v2.0921,154,492 - 21,155,692 (-)NCBIT2T-CHM13v2.0
LOC100996206
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211103,403,727 - 103,407,229 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19103,409,608 - 103,413,174 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0920,948,943 - 20,950,629 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1921,604,387 - 21,605,643 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl921,604,716 - 21,605,318 (-)Ensemblpanpan1.1panPan2
LOC100686162
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11140,697,253 - 40,697,786 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1139,362,763 - 39,363,305 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01141,642,248 - 41,642,790 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11140,334,315 - 40,334,857 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01140,122,937 - 40,123,479 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01140,758,117 - 40,758,659 (-)NCBIUU_Cfam_GSD_1.0
IFN-OMEGA-7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1201,316,989 - 201,317,561 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11201,316,989 - 201,317,561 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,853,285 - 224,853,857 (+)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:174
Count of miRNA genes:165
Interacting mature miRNAs:172
Transcripts:ENSMUST00000094992
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
1301033Abbp2_mA/J and C57BL/6 blood pressure 2 (mouse)Not determined45355083993763305Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
27095934Ulnl2_mulna length 2, 5 week (mouse)45770000094788237Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
10043964Obq26_mobesity QTL 26 (mouse)Not determined45904725193047251Mouse
1357507Synch2_msynechia 2 (mouse)Not determined46014527794145424Mouse
1301190Cd4ts2_mCD4 T cell subset 2 (mouse)Not determined46014527794145424Mouse
1357870Pfat1_mpredicted fat percentage 1 (mouse)Not determined46361952697619685Mouse
12879903Berr8_mberghei resistance locus 8 (mouse)46422246098222460Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46571808699718086Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
12880404Embq1_memotional behavior QTL 1 (mouse)46575720395921546Mouse
27095938Ulnl6_mulna length 6, 10 week (mouse)46671823798588237Mouse
1301757Tlsr4_mthymic lymphoma suppressor region 4 (mouse)Not determined466757130100757258Mouse
1357561Mbsyd_mmetabolic syndrome (mouse)Not determined466888445100888588Mouse
27095900Scvln9_msacral vertebrae length 2, 10 week (mouse)468018237107157197Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
1302057Pgia27_mproteoglycan induced arthritis 27 (mouse)Not determined470067227104067464Mouse
12879897Berr4_mberghei resistance locus 4 (mouse)471982069105982216Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined471982069105982216Mouse
1301739Pitm2_mprion incubation time 2 (mouse)Not determined471982069105982216Mouse
1302031Bulb1_mbulb size 1 (mouse)Not determined474033887108034029Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
10412193Plep_mplasma lepin levels (mouse)Not determined474444699108444983Mouse
11532700Sluc43d_msusceptibility to lung cancer 43d (mouse)474444699108444983Mouse
11532701Sluc43e_msusceptibility to lung cancer 43e (mouse)474444699108444983Mouse
11532702Sluc43f_msusceptibility to lung cancer 43f (mouse)474444699108444983Mouse
11532703Sluc43g_msusceptibility to lung cancer 43g (mouse)474444699108444983Mouse
11532704Sluc43a_msusceptibility to lung cancer 43a (mouse)474444699108444983Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474444699108444983Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
26884431Zlq8_mzygomatic length QTL 8, 16 week (mouse)474718237108357197Mouse
26884406Huml3_mhumerus length 3, 10 week (mouse)475618237100157197Mouse
1301545Gauc_mglucose area under curve (mouse)Not determined476763107110763305Mouse
1300697Sle2_msystemic lupus erythmatosus susceptibility 2 (mouse)Not determined477957579111957775Mouse
11039504Ltpr4a_mLeishmania tropica response 4a (mouse)479365751113365867Mouse
11039505Ltpr4c_mLeishmania tropica response 4c (mouse)479365751113365867Mouse
11039506Ltpr4b_mLeishmania tropica response 4b (mouse)479365751113365867Mouse
11039517Ltpr4_mLeishmania tropica response 4 (mouse)479365751113365867Mouse
4142203Lyr_mlymphoma resistance (mouse)Not determined8075244588769188Mouse
12904738Idohtq_miris defect with ocular hypertension QTL (mouse)48075246793112991Mouse
12904933Edlmmq3_mextensor digitorum longus muscle mass QTL 3 (mouse)481213991115213991Mouse
1302204Spm1_msplenomegaly modifier (mouse)Not determined482244395116244582Mouse
27095921Pglq12_mpelvic girdle length QTL 12, 16 week (mouse)483118237108357197Mouse
1301867Idd11_minsulin dependent diabetes susceptibility 11 (mouse)Not determined483604870117605006Mouse
10412176Habiir3_mhyperoxic acute lung injury imprinted region 3 (mouse)Not determined48375713094293740Mouse
27226787Feml14_mfemur length 14, 10 week (mouse)484918237107157197Mouse
26884435Zlq4_mzygomatic length QTL 4, 10 week (mouse)485118237104957197Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485428838119429037Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485781167119781279Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485781167119781279Mouse
27226801Feml6_mfemur length 6, 5 week (mouse)487518237103257197Mouse
27226746Metcl8_mmetatarsal-calcaneal length 8, 10 week (mouse)487518237107157197Mouse
27226739Metcl14_mmetatarsal-calcaneal length 14, 16 week (mouse)487518237108357197Mouse
27095927Pglq7_mpelvic girdle length QTL 7, 10 week (mouse)488118237108357197Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488118237118557197Mouse
27226770Tibl11_mtibia length 11, 10 week (mouse)488518237108357197Mouse
27226766Tibl17_mtibia length 17, 16 week (mouse)488518237108457197Mouse
1300601Tlsr1_mthymic lymphoma suppressor region 1 (mouse)Not determined48860115894957775Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000094992   ⟹   ENSMUSP00000092600
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl488,673,105 - 88,673,653 (+)Ensembl
GRCm38.p6 Ensembl488,754,868 - 88,755,416 (+)Ensembl
RefSeq Acc Id: NM_001085528   ⟹   NP_001078997
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39488,673,105 - 88,673,653 (+)NCBI
GRCm38488,754,868 - 88,755,416 (+)ENTREZGENE
MGSCv37488,400,772 - 88,401,320 (+)RGD
Celera487,265,377 - 87,265,925 (+)RGD
cM Map4 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001078997 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAB0000163 (Get FASTA)   NCBI Sequence Viewer  
  EDL30964 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000092600
  ENSMUSP00000092600.2
Reference Protein Sequences
RefSeq Acc Id: NP_001078997   ⟸   NM_001085528
- Peptide Label: precursor
- UniProtKB: B1AYH9 (UniProtKB/TrEMBL),   Q810G0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000092600   ⟸   ENSMUST00000094992

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1AYH9-F1-model_v2 AlphaFold B1AYH9 1-182 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000094618 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000094992 ENTREZGENE
  ENSMUST00000094992.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.10 UniProtKB/TrEMBL
InterPro 4_helix_cytokine-like_core UniProtKB/TrEMBL
  Interferon_alpha/beta/delta UniProtKB/TrEMBL
KEGG Report mmu:435791 UniProtKB/TrEMBL
MGD MGI:3701966 ENTREZGENE
NCBI Gene 435791 ENTREZGENE
PANTHER INTERFERON OMEGA-1 UniProtKB/TrEMBL
  Interferon_abd UniProtKB/TrEMBL
Pfam Interferon UniProtKB/TrEMBL
PhenoGen Gm13271 PhenoGen
PRINTS INTERFERONAB UniProtKB/TrEMBL
SMART IFabd UniProtKB/TrEMBL
Superfamily-SCOP 4_helix_cytokine UniProtKB/TrEMBL
UniProt B1AYH9 ENTREZGENE, UniProtKB/TrEMBL
  Q810G0 ENTREZGENE, UniProtKB/TrEMBL