Gm13181 (predicted gene 13181) - Rat Genome Database

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Gene: Gm13181 (predicted gene 13181) Mus musculus
Analyze
Symbol: Gm13181
Name: predicted gene 13181
RGD ID: 2294529
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Parl  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3923,687,365 - 3,688,618 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl23,687,399 - 3,688,467 (+)EnsemblGRCm39 Ensembl
GRCm3823,686,328 - 3,687,581 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl23,686,362 - 3,687,430 (+)EnsemblGRCm38mm10GRCm38
MGSCv3723,603,634 - 3,604,702 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3623,603,595 - 3,604,892 (+)NCBIMGSCv36mm8
Celera23,637,251 - 3,638,319 (+)NCBICelera
Cytogenetic Map2A1NCBI
cM Map22.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm13181
40 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:115
Interacting mature miRNAs:116
Transcripts:ENSMUST00000120117
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045633Heal15_mwound healing/regeneration 15 (mouse)Not determined2121989642Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse

Markers in Region
D16Ertd607e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381620,279,834 - 20,280,082UniSTSGRCm38
GRCm3823,687,322 - 3,687,567UniSTSGRCm38
MGSCv371620,279,907 - 20,280,155UniSTSGRCm37
MGSCv3723,604,594 - 3,604,839UniSTSGRCm37
Celera23,638,211 - 3,638,456UniSTS
Celera1620,843,319 - 20,843,567UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map2A1UniSTS
cM Map1614.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_028370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL732328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000120117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl23,687,399 - 3,688,467 (+)Ensembl
GRCm38.p6 Ensembl23,686,362 - 3,687,430 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000081070 Ensembl, ENTREZGENE
MGD MGI:3650464 ENTREZGENE
NCBI Gene 666495 ENTREZGENE
PhenoGen Gm13181 PhenoGen