Gm5131 (predicted gene 5131) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gm5131 (predicted gene 5131) Mus musculus
Analyze
Symbol: Gm5131
Name: predicted gene 5131
RGD ID: 2294144
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG333331
Related Functional Gene: Acadm  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39897,890,426 - 97,891,662 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl897,890,425 - 97,891,662 (+)EnsemblGRCm39 Ensembl
GRCm38897,163,794 - 97,165,030 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl897,163,793 - 97,165,030 (+)EnsemblGRCm38mm10GRCm38
MGSCv37899,687,694 - 99,688,930 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368100,040,980 - 100,054,266 (+)NCBIMGSCv36mm8
Celera8101,462,348 - 101,463,615 (+)NCBICelera
Cytogenetic Map8D1NCBI
cM Map848.37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm5131
22 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined886443553120443701Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined886443553120443701Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined886443553120443701Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
14696809Rbcn3_mrod bipolar cell number 3 (mouse)895056628102856632Mouse
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
14700778Iopq1_mintraocular pressure QTL 1 (mouse)896926628103726632Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse

Markers in Region
Acadm  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38897,163,908 - 97,164,752UniSTSGRCm38
MGSCv37899,687,808 - 99,688,652UniSTSGRCm37
Celera8101,462,462 - 101,463,339UniSTS
Cytogenetic Map3H3UniSTS
Cytogenetic Map8D1UniSTS
cM Map373.6UniSTS
cM Map373.6UniSTS
Acadm  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38897,164,580 - 97,164,684UniSTSGRCm38
GRCm383153,929,572 - 153,930,266UniSTSGRCm38
MGSCv37899,688,480 - 99,688,584UniSTSGRCm37
MGSCv373153,592,536 - 153,593,230UniSTSGRCm37
Celera3160,393,231 - 160,393,925UniSTS
Celera8101,463,167 - 101,463,271UniSTS
Cytogenetic Map3H3UniSTS
Cytogenetic Map8D1UniSTS
cM Map373.6UniSTS
ACADM  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38897,164,787 - 97,164,961UniSTSGRCm38
GRCm383153,925,665 - 153,925,852UniSTSGRCm38
MGSCv37899,688,687 - 99,688,861UniSTSGRCm37
MGSCv373153,588,629 - 153,588,816UniSTSGRCm37
Celera8101,463,374 - 101,463,546UniSTS
Celera3160,389,324 - 160,389,511UniSTS
Cytogenetic Map8D1UniSTS
Cytogenetic Map3H3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_019669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000212776
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl897,890,425 - 97,891,662 (+)Ensembl
GRCm38.p6 Ensembl897,163,793 - 97,165,030 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000110715 Ensembl, ENTREZGENE
MGD MGI:3644589 ENTREZGENE
NCBI Gene 333331 ENTREZGENE
PhenoGen Gm5131 PhenoGen