Gm15190 (predicted gene 15190) - Rat Genome Database

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Gene: Gm15190 (predicted gene 15190) Mus musculus
Analyze
Symbol: Gm15190
Name: predicted gene 15190
RGD ID: 2294083
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ENSMUSG00000043469
Related Functional Gene: Lamtor5  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X158,367,396 - 158,368,108 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX158,367,779 - 158,368,054 (-)EnsemblGRCm39 Ensembl
GRCm38X159,584,400 - 159,585,112 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX159,584,783 - 159,585,058 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X156,022,332 - 156,023,044 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X156,022,295 - 156,023,047 (-)NCBIMGSCv36mm8
CeleraX142,829,712 - 142,830,424 (-)NCBICelera
Cytogenetic MapXF4NCBI
cM MapX73.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm15190
21 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:117
Interacting mature miRNAs:120
Transcripts:ENSMUST00000120855
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
12738421Lfibq17_mliver fibrosis QTL 17 (mouse)X148148453164945064Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000120855
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX158,367,779 - 158,368,054 (-)Ensembl
GRCm38.p6 EnsemblX159,584,783 - 159,585,058 (-)Ensembl
Protein Sequences
GenBank Protein EDL40817 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000082693 Ensembl
MGD MGI:3705630 ENTREZGENE
NCBI Gene 100041359 ENTREZGENE
PhenoGen Gm15190 PhenoGen