Gm4784 (predicted gene 4784) - Rat Genome Database

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Gene: Gm4784 (predicted gene 4784) Mus musculus
Analyze
Symbol: Gm4784
Name: predicted gene 4784
RGD ID: 2294062
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG213474
Related Functional Gene: Eif4b  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X108,432,350 - 108,434,126 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX108,432,350 - 108,435,771 (-)EnsemblGRCm39 Ensembl
GRCm38X109,388,744 - 109,390,520 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX109,388,744 - 109,392,165 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X106,583,966 - 106,588,702 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X92,221,405 - 92,226,141 (-)NCBIMGSCv36mm8
MGSCv36X105,591,346 - 105,596,082 (-)NCBIMGSCv36mm8
CeleraX96,205,369 - 96,210,095 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX48.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm4784
40 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:71
Count of miRNA genes:69
Interacting mature miRNAs:69
Transcripts:ENSMUST00000117365
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_028395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL670648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000117365
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX108,432,350 - 108,435,771 (-)Ensembl
GRCm38.p6 EnsemblX109,388,744 - 109,392,165 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000082189 Ensembl
MGD MGI:3648818 ENTREZGENE
NCBI Gene 213474 ENTREZGENE
PhenoGen Gm4784 PhenoGen