Gsg1l2 (GSG1-like 2) - Rat Genome Database

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Gene: Gsg1l2 (GSG1-like 2) Mus musculus
Analyze
Symbol: Gsg1l2
Name: GSG1-like 2
RGD ID: 2293965
MGI Page MGI
Description: Predicted to be active in plasma membrane. Orthologous to human GSG1L2 (GSG1 like 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: germ cell-specific gene 1-like protein 2; Gm12302; putative germ cell-specific gene 1-like protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391167,665,434 - 67,680,724 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1167,665,434 - 67,680,724 (+)EnsemblGRCm39 Ensembl
GRCm381167,774,608 - 67,789,898 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1167,774,608 - 67,789,898 (+)EnsemblGRCm38mm10GRCm38
MGSCv371167,588,110 - 67,603,400 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361167,590,803 - 67,606,093 (+)NCBIMGSCv36mm8
Celera1174,718,459 - 74,733,639 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1141.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
silver atom  (EXP)
silver(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21873635   PMID:24316575  


Genomics

Comparative Map Data
Gsg1l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391167,665,434 - 67,680,724 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1167,665,434 - 67,680,724 (+)EnsemblGRCm39 Ensembl
GRCm381167,774,608 - 67,789,898 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1167,774,608 - 67,789,898 (+)EnsemblGRCm38mm10GRCm38
MGSCv371167,588,110 - 67,603,400 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361167,590,803 - 67,606,093 (+)NCBIMGSCv36mm8
Celera1174,718,459 - 74,733,639 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1141.13NCBI
GSG1L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38179,800,608 - 9,822,079 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl179,800,608 - 9,822,079 (-)EnsemblGRCh38hg38GRCh38
GRCh37179,703,925 - 9,725,396 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36179,646,428 - 9,666,113 (-)NCBINCBI36Build 36hg18NCBI36
Celera179,738,149 - 9,756,712 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef179,606,099 - 9,625,729 (-)NCBIHuRef
CHM1_1179,715,713 - 9,735,420 (-)NCBICHM1_1
T2T-CHM13v2.0179,708,320 - 9,729,826 (-)NCBIT2T-CHM13v2.0
Gsg1l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81052,968,601 - 52,985,278 (+)NCBIGRCr8
mRatBN7.21052,469,652 - 52,486,333 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1052,469,652 - 52,486,333 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01054,327,208 - 54,344,318 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01054,073,380 - 54,089,573 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41054,490,951 - 54,509,165 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1051,647,296 - 51,667,633 (+)NCBICelera
Cytogenetic Map10q24NCBI
Gsg1l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554677,308,952 - 7,323,319 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554677,308,935 - 7,323,266 (+)NCBIChiLan1.0ChiLan1.0
GSG1L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21963,927,175 - 63,949,936 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11768,736,695 - 68,759,518 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01741,833,900 - 41,854,895 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11746,578,102 - 46,597,825 (+)NCBIpanpan1.1PanPan1.1panPan2
GSG1L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1534,250,041 - 34,264,524 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl534,249,811 - 34,264,524 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha534,385,734 - 34,400,567 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0534,353,741 - 34,368,590 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl534,353,863 - 34,368,590 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1534,319,541 - 34,334,381 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0534,277,619 - 34,292,460 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0534,458,113 - 34,472,950 (-)NCBIUU_Cfam_GSD_1.0
Gsg1l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560249,288,263 - 49,310,184 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365952,762,893 - 2,784,359 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365952,762,449 - 2,784,380 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSG1L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1254,665,268 - 54,677,502 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11254,664,400 - 54,677,502 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21257,423,059 - 57,435,711 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GSG1L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366605912,184,147 - 12,202,659 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gsg1l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478612,242,328 - 12,258,583 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gsg1l2
609 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:94
Interacting mature miRNAs:98
Transcripts:ENSMUST00000181566
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
4141642Ltxs2_mlethal factor toxin susceptibility 2 (mouse)Not determined116304211368500330Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000155317   ⟹   ENSMUSP00000145865
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1167,671,769 - 67,676,140 (+)Ensembl
GRCm38.p6 Ensembl1167,780,943 - 67,785,314 (+)Ensembl
RefSeq Acc Id: ENSMUST00000181566   ⟹   ENSMUSP00000137895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1167,665,434 - 67,680,724 (+)Ensembl
GRCm38.p6 Ensembl1167,774,608 - 67,789,898 (+)Ensembl
RefSeq Acc Id: NM_001347057   ⟹   NP_001333986
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391167,665,434 - 67,680,724 (+)NCBI
GRCm381167,774,608 - 67,789,898 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001333986 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000137895
  ENSMUSP00000137895.2
  ENSMUSP00000145865.2
RefSeq Acc Id: NP_001333986   ⟸   NM_001347057
- Peptide Label: precursor
- UniProtKB: M0QWL6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000137895   ⟸   ENSMUST00000181566
RefSeq Acc Id: ENSMUSP00000145865   ⟸   ENSMUST00000155317

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0QWL6-F1-model_v2 AlphaFold M0QWL6 1-290 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3650209 AgrOrtholog
Ensembl Genes ENSMUSG00000097886 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000155317.2 UniProtKB/TrEMBL
  ENSMUST00000181566 ENTREZGENE
  ENSMUST00000181566.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro GSG-1 UniProtKB/TrEMBL
MGD MGI:3650209 ENTREZGENE
NCBI Gene 544792 ENTREZGENE
PANTHER EPITHELIAL MEMBRANE PROTEIN-RELATED UniProtKB/TrEMBL
  GERM CELL-SPECIFIC GENE 1-LIKE PROTEIN 2 UniProtKB/TrEMBL
Pfam GSG-1 UniProtKB/TrEMBL
PhenoGen Gsg1l2 PhenoGen
UniProt A0A0U1RP77_MOUSE UniProtKB/TrEMBL
  M0QWL6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-04 Gsg1l2  GSG1-like 2  Gm12302  predicted gene 12302  Symbol and/or name change 5135510 APPROVED