Paep (progestagen associated endometrial protein) - Rat Genome Database

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Gene: Paep (progestagen associated endometrial protein) Rattus norvegicus
Analyze
Symbol: Paep
Name: progestagen associated endometrial protein
RGD ID: 2293817
Description: Predicted to enable small molecule binding activity. Predicted to be involved in several processes, including negative regulation of sperm capacitation; positive regulation of granulocyte macrophage colony-stimulating factor production; and regulation of binding activity of sperm to zona pellucida. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human PAEP (progestagen associated endometrial protein); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Lcn11; lipocalin 11
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.238,531,136 - 8,534,430 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,531,138 - 8,534,430 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,637,821 - 11,641,115 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0320,224,058 - 20,227,352 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0318,413,894 - 18,417,188 (-)NCBIRnor_WKY
Rnor_6.032,935,396 - 2,938,883 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.038,599,189 - 8,602,477 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,883,332 - 3,886,626 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera33,431,983 - 3,435,265 (+)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:3667877   PMID:12672671   PMID:15883155   PMID:17192260   PMID:18996219   PMID:19945098   PMID:23451353  


Genomics

Comparative Map Data
Paep
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.238,531,136 - 8,534,430 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,531,138 - 8,534,430 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,637,821 - 11,641,115 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0320,224,058 - 20,227,352 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0318,413,894 - 18,417,188 (-)NCBIRnor_WKY
Rnor_6.032,935,396 - 2,938,883 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.038,599,189 - 8,602,477 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,883,332 - 3,886,626 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera33,431,983 - 3,435,265 (+)NCBICelera
Cytogenetic Map3p13NCBI
PAEP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389135,561,756 - 135,566,955 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl9135,561,756 - 135,566,955 (+)EnsemblGRCh38hg38GRCh38
GRCh379138,453,602 - 138,458,801 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369137,593,425 - 137,598,443 (+)NCBINCBI36Build 36hg18NCBI36
Build 349135,679,548 - 135,684,567NCBI
Celera9108,970,476 - 108,975,523 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9107,915,451 - 107,920,498 (+)NCBIHuRef
CHM1_19138,602,185 - 138,607,211 (+)NCBICHM1_1
T2T-CHM13v2.09147,789,564 - 147,794,795 (+)NCBIT2T-CHM13v2.0
Lcn11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,667,029 - 25,670,291 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,667,029 - 25,670,291 (+)EnsemblGRCm39 Ensembl
GRCm38225,777,017 - 25,780,279 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,777,017 - 25,780,279 (+)EnsemblGRCm38mm10GRCm38
MGSCv37225,632,537 - 25,635,799 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,599,026 - 25,602,288 (+)NCBIMGSCv36mm8
Celera225,503,112 - 25,506,377 (+)NCBICelera
Cytogenetic Map2A3NCBI
PAEP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19135,667,342 - 135,672,464 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v09106,669,550 - 106,681,918 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
LOC491263
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,663,646 - 49,667,034 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha948,916,053 - 48,919,441 (-)NCBIDog10K_Boxer_Tasha
PAEP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21308,664,373 - 308,669,075 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103239650
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1122,624,894 - 2,630,817 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl122,625,017 - 2,630,602 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660582,528,029 - 2,535,826 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Paep
29 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:43
Count of miRNA genes:39
Interacting mature miRNAs:40
Transcripts:ENSRNOT00000065658
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system
High
Medium
Low 1
Below cutoff 2 1 1 1 3 8 9

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000084196   ⟹   ENSRNOP00000075567
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl38,531,138 - 8,534,430 (-)Ensembl
RefSeq Acc Id: NM_001135809   ⟹   NP_001129281
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.238,531,136 - 8,534,430 (-)NCBI
Rnor_6.032,935,396 - 2,938,883 (-)NCBI
Rnor_5.038,599,189 - 8,602,477 (+)NCBI
RGSC_v3.433,883,332 - 3,886,626 (-)RGD
Celera33,431,983 - 3,435,265 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001129281 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABG24238 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001129281   ⟸   NM_001135809
- Peptide Label: precursor
- UniProtKB: B3EY86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075567   ⟸   ENSRNOT00000084196
Protein Domains
Lipocln_cytosolic_FA-bd_dom

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B3EY86-F1-model_v2 AlphaFold B3EY86 1-177 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2293817 AgrOrtholog
BioCyc Gene G2FUF-50423 BioCyc
Ensembl Genes ENSRNOG00000070613 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000075567 ENTREZGENE
  ENSRNOP00000075567.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084196 ENTREZGENE
  ENSRNOT00000084196.2 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/TrEMBL
InterPro Calycin UniProtKB/TrEMBL
  Lipocalin UniProtKB/TrEMBL
  Lipocln_cytosolic_FA_bd UniProtKB/TrEMBL
KEGG Report rno:100169711 UniProtKB/TrEMBL
NCBI Gene 100169711 ENTREZGENE
PANTHER PTHR11430 UniProtKB/TrEMBL
Pfam Lipocalin UniProtKB/TrEMBL
PhenoGen Paep PhenoGen
Superfamily-SCOP Calycin UniProtKB/TrEMBL
UniProt B3EY86 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-01-09 Paep  progestagen associated endometrial protein  Lcn11  lipocalin 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-13 Lcn11  lipocalin 11      Symbol and Name status set to provisional 70820 PROVISIONAL