Ccdc201 (coiled coil domain 201) - Rat Genome Database

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Gene: Ccdc201 (coiled coil domain 201) Mus musculus
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Symbol: Ccdc201
Name: coiled coil domain 201
RGD ID: 2293294
MGI Page MGI
Description: Is expressed in ovary. Orthologous to human CCDC201 (coiled-coil domain containing 201).
Type: ncrna (Ensembl: protein-coding)
RefSeq Status: VALIDATED
Previously known as: Cccd201; Gm11985; predicted gene 11985
RGD Orthologs
Human
Bonobo
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39117,133,157 - 7,138,569 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl117,133,153 - 7,138,569 (-)EnsemblGRCm39 Ensembl
GRCm38117,183,157 - 7,188,569 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl117,183,153 - 7,188,569 (-)EnsemblGRCm38mm10GRCm38
MGSCv37117,083,160 - 7,086,381 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36117,083,160 - 7,086,443 (-)NCBIMGSCv36mm8
Celera117,658,378 - 7,661,599 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map114.75NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10922068   PMID:17567914   PMID:24316575  


Genomics

Comparative Map Data
Ccdc201
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39117,133,157 - 7,138,569 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl117,133,153 - 7,138,569 (-)EnsemblGRCm39 Ensembl
GRCm38117,183,157 - 7,188,569 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl117,183,153 - 7,188,569 (-)EnsemblGRCm38mm10GRCm38
MGSCv37117,083,160 - 7,086,381 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36117,083,160 - 7,086,443 (-)NCBIMGSCv36mm8
Celera117,658,378 - 7,661,599 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map114.75NCBI
CCDC201
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38745,859,994 - 45,885,172 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl745,859,994 - 45,873,082 (-)EnsemblGRCh38hg38GRCh38
GRCh37745,899,593 - 45,912,681 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7p12.3NCBI
T2T-CHM13v2.0746,021,709 - 46,046,887 (-)NCBIT2T-CHM13v2.0
CCDC201
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2650,745,157 - 50,758,245 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1799,069,895 - 99,082,983 (-)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl746,632,628 - 46,642,537 (-)Ensemblpanpan1.1panPan2
LOC106506856
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1850,034,031 - 50,042,971 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11850,033,973 - 50,042,961 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21854,881,880 - 54,886,877 (+)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Ccdc201
192 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:60
Count of miRNA genes:57
Interacting mature miRNAs:60
Transcripts:ENSMUST00000122910
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226794Feml9_mfemur length 9, 5 week (mouse)11705000016750000Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000122910   ⟹   ENSMUSP00000147806
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl117,133,153 - 7,138,569 (-)Ensembl
GRCm38.p6 Ensembl117,183,153 - 7,188,569 (-)Ensembl
RefSeq Acc Id: NR_045101
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39117,133,157 - 7,138,569 (-)NCBI
GRCm38117,183,157 - 7,188,569 (-)NCBI
Celera117,658,378 - 7,663,790 (-)NCBI
Sequence:
Protein Sequences
Ensembl Protein ENSMUSP00000147806.2
RefSeq Acc Id: ENSMUSP00000147806   ⟸   ENSMUST00000122910

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1B0GS61-F1-model_v2 AlphaFold A0A1B0GS61 1-206 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3650614 AgrOrtholog
Ensembl Genes ENSMUSG00000087512 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000122910 ENTREZGENE
  ENSMUST00000122910.3 UniProtKB/TrEMBL
MGD MGI:3650614 ENTREZGENE
NCBI Gene 100041347 ENTREZGENE
PhenoGen Ccdc201 PhenoGen
RNAcentral URS000075C339 RNACentral
UniProt A0A1B0GS61_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-27 Ccdc201  coiled coil domain 201  Cccd201  coiled coil domain 201  Symbol and/or name change 5135510 APPROVED
2019-04-09 Cccd201  coiled coil domain 201  Gm11985  predicted gene 11985  Symbol and/or name change 5135510 APPROVED
2014-09-17 Gm11985  predicted gene 11985  BG074389  expressed sequence BG074389  Symbol and/or name change 5135510 APPROVED