Map2k3os (mitogen-activated protein kinase kinase 3, opposite strand) - Rat Genome Database

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Gene: Map2k3os (mitogen-activated protein kinase kinase 3, opposite strand) Mus musculus
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Symbol: Map2k3os
Name: mitogen-activated protein kinase kinase 3, opposite strand
RGD ID: 2293076
MGI Page MGI
Description: INTERACTS WITH carbon nanotube; clofibrate; perfluorohexanesulfonic acid
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: F3-1; Gm16516; Gtlf; Gtlf3a
RGD Orthologs
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,811,767 - 60,822,693 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,811,733 - 60,822,769 (-)EnsemblGRCm39 Ensembl
GRCm381160,920,941 - 60,931,867 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,920,917 - 60,931,867 (-)EnsemblGRCm38mm10GRCm38
MGSCv371160,734,443 - 60,745,369 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,737,136 - 60,748,062 (-)NCBIMGSCv36mm8
Celera1165,160,155 - 65,171,077 (-)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1137.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10402672   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12904583   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17967808  
PMID:18799693   PMID:24316575  


Genomics

Comparative Map Data
Map2k3os
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,811,767 - 60,822,693 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,811,733 - 60,822,769 (-)EnsemblGRCm39 Ensembl
GRCm381160,920,941 - 60,931,867 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,920,917 - 60,931,867 (-)EnsemblGRCm38mm10GRCm38
MGSCv371160,734,443 - 60,745,369 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,737,136 - 60,748,062 (-)NCBIMGSCv36mm8
Celera1165,160,155 - 65,171,077 (-)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1137.94NCBI
Map2k3os
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81046,096,890 - 46,107,486 (-)NCBIGRCr8
mRatBN7.21045,597,396 - 45,607,992 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1050,299,546 - 50,310,153 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01049,789,933 - 49,800,540 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01045,293,519 - 45,304,126 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01047,171,684 - 47,182,280 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera1044,852,197 - 44,862,876 (-)NCBICelera
Cytogenetic Map10q22NCBI

Variants

.
Variants in Map2k3os
261 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:49
Interacting mature miRNAs:49
Transcripts:ENSMUST00000123544
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000123544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,811,733 - 60,822,769 (-)Ensembl
GRCm38.p6 Ensembl1160,920,917 - 60,931,867 (-)Ensembl
RefSeq Acc Id: ENSMUST00000243473
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,822,157 - 60,822,748 (-)Ensembl
RefSeq Acc Id: ENSMUST00000243488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,811,743 - 60,822,714 (-)Ensembl
RefSeq Acc Id: NR_027800
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,811,767 - 60,822,693 (-)NCBI
GRCm381160,920,941 - 60,931,867 (-)ENTREZGENE
MGSCv371160,734,443 - 60,745,369 (-)RGD
Celera1165,160,155 - 65,171,077 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAB26249 (Get FASTA)   NCBI Sequence Viewer  
  BAB26671 (Get FASTA)   NCBI Sequence Viewer  
  BAB26705 (Get FASTA)   NCBI Sequence Viewer  
  EDL38688 (Get FASTA)   NCBI Sequence Viewer  

Promoters
RGD ID:6821242
Promoter ID:MM_KWN:7753
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000012915,   OTTMUST00000014413,   OTTMUST00000014414,   OTTMUST00000014415,   OTTMUST00000014417
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361160,744,581 - 60,746,007 (+)MPROMDB
RGD ID:8674910
Promoter ID:EPDNEW_M15486
Type:initiation region
Name:Map2k3os_1
Description:Mus musculus mitogen-activated protein kinase kinase 3, oppositestrand , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381160,931,879 - 60,931,939EPDNEW
RGD ID:15093925
Promoter ID:EPDNEWNC_M1841
Type:multiple initiation site
Name:Map2k3os_1
Description:mitogen-activated protein kinase kinase 3, opposite strand[Source:MGI Symbol;Acc:MGI:1344334]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381160,931,879 - 60,931,939EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000042549 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000123544 ENTREZGENE
MGD MGI:1344334 ENTREZGENE
NCBI Gene 24082 ENTREZGENE
PhenoGen Map2k3os PhenoGen
RNAcentral URS000075F0D5 RNACentral
UniProt Q9D6Q1_MOUSE UniProtKB/TrEMBL
  Q9D6R7_MOUSE UniProtKB/TrEMBL
  Q9D7C0_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-26 Map2k3os  mitogen-activated protein kinase kinase 3, opposite strand    Map2k3 opposite strand transcript  Symbol and/or name change 5135510 APPROVED
2013-11-05 Map2k3os  Map2k3 opposite strand transcript  Gm16516  predicted gene, Gm16516  Symbol and/or name change 5135510 APPROVED
2011-07-27 Gm16516  predicted gene, Gm16516  Gtlf3a  gene trap locus F3a  Symbol and/or name change 5135510 APPROVED