POM121B (POM121 transmembrane nucleoporin B (pseudogene)) - Rat Genome Database

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Gene: POM121B (POM121 transmembrane nucleoporin B (pseudogene)) Homo sapiens
Analyze
No known orthologs.
Symbol: POM121B
Name: POM121 transmembrane nucleoporin B (pseudogene)
RGD ID: 2290514
HGNC Page HGNC:34004
Description: Predicted to enable nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to be involved in RNA export from nucleus and protein import into nucleus. Predicted to be located in nucleus. Predicted to be part of nuclear pore.
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: POM121  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38773,293,495 - 73,303,235 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl773,293,497 - 73,301,161 (+)EnsemblGRCh38hg38GRCh38
GRCh37772,707,495 - 72,717,232 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36772,343,793 - 72,355,158 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map7q11.23NCBI
HuRef768,584,169 - 68,598,974 (+)NCBIHuRef
CHM1_1772,853,517 - 72,863,257 (+)NCBICHM1_1
T2T-CHM13v2.0774,493,658 - 74,503,393 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2772,040,567 - 72,050,304 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear pore  (IBA,IEA)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9847074   PMID:12853948   PMID:17900573   PMID:19413330   PMID:21873635   PMID:35271311  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:272
Count of miRNA genes:262
Interacting mature miRNAs:267
Transcripts:ENST00000380760, ENST00000411631
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
POM121_9011  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37772,715,850 - 72,716,771UniSTSGRCh37
GRCh37772,417,461 - 72,418,382UniSTSGRCh37
Build 36772,055,397 - 72,056,318RGDNCBI36
Celera768,194,141 - 68,195,062RGD
HuRef768,597,592 - 68,598,513UniSTS
CRA_TCAGchr7v2772,048,922 - 72,049,843UniSTS
CRA_TCAGchr7v2771,750,283 - 71,751,204UniSTS
SHGC-56093  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37772,716,361 - 72,716,489UniSTSGRCh37
GRCh37772,417,972 - 72,418,100UniSTSGRCh37
Build 36772,055,908 - 72,056,036RGDNCBI36
Celera768,194,652 - 68,194,780RGD
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map7q11.2UniSTS
CRA_TCAGchr7v2771,750,794 - 71,750,922UniSTS
CRA_TCAGchr7v2772,049,433 - 72,049,561UniSTS
GeneMap99-GB4 RH Map7424.1UniSTS
Whitehead-RH Map7399.7UniSTS
NCBI RH Map7876.7UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 4 1 2 4
Low 1139 957 818 164 647 94 2484 722 1225 217 1039 1070 80 754 1473 2
Below cutoff 1286 1984 864 420 1097 333 1865 1452 2430 183 390 527 89 450 1310 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000380760
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl773,293,497 - 73,301,161 (+)Ensembl
Protein Sequences
GenBank Protein A6NF01 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A6NF01-F1-model_v2 AlphaFold A6NF01 1-834 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:34004 AgrOrtholog
COSMIC POM121B COSMIC
Ensembl Genes ENSG00000205578 Ensembl
GTEx ENSG00000205578 GTEx
HGNC ID HGNC:34004 ENTREZGENE
Human Proteome Map POM121B Human Proteome Map
InterPro Nucleoporin UniProtKB/Swiss-Prot
NCBI Gene 100288540 ENTREZGENE
PANTHER NUCLEAR ENVELOPE PORE MEMBRANE PROTEIN POM 121C-RELATED UniProtKB/Swiss-Prot
  PTHR23193 UniProtKB/Swiss-Prot
Pfam POM121 UniProtKB/Swiss-Prot
UniProt A6NF01 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-03-20 POM121B  POM121 transmembrane nucleoporin B (pseudogene)  POM121B  POM121 membrane glycoprotein B (pseudogene)  Symbol and/or name change 5135510 APPROVED