Snhg16 (small nucleolar RNA host gene 16)

Gene: Snhg16 (small nucleolar RNA host gene 16) Mus musculus

Analyze

Symbol:

Snhg16

Name:

small nucleolar RNA host gene 16

RGD ID:

2290342

MGI Page

MGI

Description:

Orthologous to human SNHG16 (small nucleolar RNA host gene 16).

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

1810032O08Rik; RIKEN cDNA 1810032O08 gene

RGD Orthologs

Human

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	116,562,486 - 116,566,624 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	116,562,430 - 116,575,898 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	116,671,660 - 116,675,798 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	116,671,604 - 116,685,072 (+)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	11	116,671,660 - 116,675,799 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	116,532,974 - 116,537,112 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	116,487,759 - 116,491,886 (+)	NCBI		MGSCv36	mm8
Celera	11	128,442,824 - 128,447,242 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	81.49	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

2-hydroxypropanoic acid (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

chlorpyrifos (EXP)

cisplatin (ISO)

diuron (ISO)

doxorubicin (ISO)

fipronil (ISO)

folic acid (EXP)

methylseleninic acid (ISO)

N,N-diethyl-m-toluamide (ISO)

ozone (ISO)

rac-lactic acid (ISO)

tetrachloromethane (EXP)

triptonide (EXP)

trovafloxacin (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:12520002	PMID:12904583	PMID:14610273	PMID:16141072	PMID:16141073
PMID:16751776	PMID:18799693	PMID:20657840	PMID:32504027	PMID:33549106	PMID:36658449	PMID:37700342	PMID:38079211

Genomics

Comparative Map Data

Snhg16
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	116,562,486 - 116,566,624 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	116,562,430 - 116,575,898 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	116,671,660 - 116,675,798 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	116,671,604 - 116,685,072 (+)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	11	116,671,660 - 116,675,799 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	116,532,974 - 116,537,112 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	116,487,759 - 116,491,886 (+)	NCBI		MGSCv36	mm8
Celera	11	128,442,824 - 128,447,242 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	81.49	NCBI

SNHG16
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	76,557,764 - 76,565,348 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	76,557,727 - 76,670,985 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	74,553,846 - 74,561,430 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Celera	17	71,146,185 - 71,153,754 (+)	NCBI		Celera
Cytogenetic Map	17	q25.1	NCBI
HuRef	17	69,981,418 - 69,988,981 (+)	NCBI		HuRef
CHM1_1	17	74,618,814 - 74,626,371 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	77,454,512 - 77,462,094 (+)	NCBI		T2T-CHM13v2.0

Variants

Variants in Snhg16
104 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1301
Count of miRNA genes:	537
Interacting mature miRNAs:	620
Transcripts:	ENSMUST00000106378, ENSMUST00000131260, ENSMUST00000134818, ENSMUST00000139934, ENSMUST00000142834, ENSMUST00000144049, ENSMUST00000153405
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
39128214	Lwq20_m	liver weight QTL 20 (mouse)					11	12268637	118022724	Mouse
14747003	Mancz9_m	mandible centroid size 9 (mouse)					11	85844911	119844911	Mouse
15039374	Adip29_m	adiposity 29 (mouse)					11	86608320	120608320	Mouse
15039376	Bw42_m	body weight QTL 42 (mouse)					11	86608320	120608320	Mouse
15014785	Mvlq1_m	macrovesicular liver lesion QTL 1 (mouse)					11	86608320	120608320	Mouse
27226789	Feml16_m	femur length 16, 10 week (mouse)					11	87490826	121873369	Mouse
10044007	Hbnr14_m	Heligmosomoides bakeri nematode resistance 14 (mouse)			Not determined		11	87502600	121502698	Mouse
11251723	Ewc5_m	ethanol withdrawal and consumption 5 (mouse)					11	89869251	121973369	Mouse
1558753	Ath19_m	atherosclerosis 19 (mouse)			Not determined		11	91604608	121973369	Mouse
1302034	Pkccl_m	protein kinase C content in lungs (mouse)			Not determined		11	91604608	121973369	Mouse
1301095	El6_m	epilepsy 6 (mouse)			Not determined		11	93229183	121973369	Mouse
4141939	Pregq2_m	pregnancy QTL 2 (mouse)			Not determined		11	94063779	118022724	Mouse
27226731	Tibmd4_m	tibia midshaft diameter 4, 10 week (mouse)					11	94190826	118890826	Mouse
4141465	Dbm2_m	diabetes modifier 2 (mouse)			Not determined			94437183	118022724	Mouse
1301958	Alcp18_m	alcohol preference locus 18 (mouse)			Not determined		11	95403965	121973369	Mouse
1300944	Alcp20_m	alcohol preference locus 20 (mouse)			Not determined		11	95403965	121973369	Mouse
1300962	Cd8mts4_m	CD8 memory T cell subset 4 (mouse)			Not determined		11	96137674	121973369	Mouse
1301057	Nidd4_m	non-insulin-dependent diabetes mellitus 4 (mouse)			Not determined		11	96810136	121973369	Mouse
1301983	Berr2_m	berghei resistance locus 2 (mouse)			Not determined		11	98352609	121973369	Mouse
10043976	Obq33_m	obesity QTL 33 (mouse)			Not determined		11	98500469	121973369	Mouse
10044001	Alcw8_m	alcohol withdrawal 8 (mouse)			Not determined		11	99254187	121973369	Mouse
11553867	Stmm5_m	skin tumor modifier of MSM 5 (mouse)					11	100058103	121973369	Mouse
11341721	Rvfs2_m	Rift Valley fever susceptibility 2 (mouse)					11	100254186	120887165	Mouse
1301012	Vispl_m	visual placing (mouse)			Not determined		11	101022590	121973369	Mouse

Markers in Region

UniSTS:224449

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	116,673,090 - 116,673,273	UniSTS	GRCm38
MGSCv37	11	116,534,404 - 116,534,587	UniSTS	GRCm37
Celera	11	128,444,254 - 128,444,437	UniSTS
Cytogenetic Map	11	E2	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_027819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_027820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_027821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK007675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK013681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK037979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK088915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL607039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC055707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ540175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000106378

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,481 - 116,566,625 (+)	Ensembl
GRCm38.p6 Ensembl	11	116,671,669 - 116,675,798 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000131260

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,563,474 - 116,566,624 (+)	Ensembl
GRCm38.p6 Ensembl	11	116,672,648 - 116,675,798 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000134818

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,697 - 116,566,624 (+)	Ensembl
GRCm38.p6 Ensembl	11	116,671,871 - 116,675,798 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000139934

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,440 - 116,566,631 (+)	Ensembl
GRCm38.p6 Ensembl	11	116,671,660 - 116,675,798 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000142834

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,489 - 116,566,629 (+)	Ensembl
GRCm38.p6 Ensembl	11	116,671,669 - 116,675,795 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000144049

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,486 - 116,566,624 (+)	Ensembl
GRCm38.p6 Ensembl	11	116,671,708 - 116,674,587 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000153405

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,481 - 116,566,624 (+)	Ensembl
GRCm38.p6 Ensembl	11	116,671,677 - 116,675,793 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000239180

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,485 - 116,566,624 (+)	Ensembl
GRCm38.p6 Ensembl	11	116,671,669 - 116,675,797 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000239190

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,507 - 116,575,898 (+)	Ensembl
GRCm38.p6 Ensembl	11	116,671,681 - 116,685,072 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000239226

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,489 - 116,566,624 (+)	Ensembl
GRCm38.p6 Ensembl	11	116,671,675 - 116,675,798 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000239281

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,481 - 116,566,629 (+)	Ensembl
GRCm38.p6 Ensembl	11	116,671,688 - 116,675,799 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000239283

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,875 - 116,566,623 (+)	Ensembl
GRCm38.p6 Ensembl	11	116,672,049 - 116,675,797 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000239362

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,563,743 - 116,566,619 (+)	Ensembl
GRCm38.p6 Ensembl	11	116,672,917 - 116,675,793 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000239363

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,430 - 116,566,624 (+)	Ensembl
GRCm38.p6 Ensembl	11	116,671,604 - 116,675,793 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000244323

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,492 - 116,566,624 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000247039

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,492 - 116,566,624 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000247503

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,495 - 116,566,624 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000247511

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,495 - 116,566,621 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000247579

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	116,562,495 - 116,566,624 (+)	Ensembl

RefSeq Acc Id:

NR_027819

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	116,562,486 - 116,566,624 (+)	NCBI
GRCm38	11	116,671,660 - 116,675,798 (+)	ENTREZGENE
MGSCv37	11	116,532,974 - 116,537,112 (+)	RGD
Celera	11	128,442,824 - 128,447,242 (+)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

GATCTCGTCCTTTCCGAGGTCCTCTGCCGCGTGTTTGGAAGTTATGGCCGCGCGGGTCTGTGGT
GTTCTCCCTGAAAGGCCTAAGCTTTGGGTGATGGCATTGCCTTTTGGCACTCGGGAGACAAGAT
GCAGGTTCCGTCTCAGAAGTAATGGCTGGATCCCTGAAAGCCAACGGGCTCGGTGTGGTCCACC
CGTCAGAAGGCATAGGTAGATGGTGGGCATCTGCCTCAGACATAGTTCTCAAGTTCAGCCAGAA
GAATGCGCGTTGAGCCCTCTGCAGCCCGTGTCGACGGAGGTGTTGTCTCCAGGAAGCATCATGG
AAAGGCGTGGTGGTGCACAAGGGCCTTCAGGATGCCTGCGCCTGGTGACGGCTGCGCCTCAGGT
TCTGGGCCTGACTCGGAAGGGTGCCTGTGAGCAGAAGAGCTGGCACGCGCAGCTCAGTGGACCA
TCAGTGCCAACCCGTCCTGTACCCTGGCTGAGGGGTGTGCTAAGTGGCAGATTCCCGGTTGGCT
CATCGTAAGGCGTGGCACAAAATCACCATCGAAAGAAAGGGCCTTCGGGATGCCTCTATCTGGT
TATTGCCCTGTAGTGCCAGAGAGAACCACATAGCCTGCTGCTGCTCCTGCCTTTAATTTCCCAA
AGAGTCATCAGACGACCTTGGAGTTTGTTCTGCAAGAGGAGCCAGTAAGGCCTCGTGACTGTGG
TCACCCTCGGAAGCCTTTGACAGCTAGCTGGTGAGGGCGCTCAGTCGGAGGCCCTGGGGAGGCC
CCTGCTAAGCCGAGAAAAGCATTTCTCACAGTGGATTTCCTGGAAGTCAGGGTTGGCCTTTGTA
TTTTGAAGCACAAATAAACTTTATAAAATTTAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_027820

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	116,562,486 - 116,566,624 (+)	NCBI
GRCm38	11	116,671,660 - 116,675,798 (+)	ENTREZGENE
MGSCv37	11	116,532,974 - 116,537,112 (+)	RGD
Celera	11	128,442,824 - 128,447,242 (+)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

GATCTCGTCCTTTCCGAGGTCCTCTGCCGCGTGTTTGGAAGTTATGGCCGCGCGGGTCTGTGGT
GTTCTCCCTGAAAGGCCTAAGCTTTGGGTGATGACGGAGGTGTTGTCTCCAGGAAGCATCATGG
AAAGGCGTGGTGGTGCACAAGGGCCTTCAGGATGCCTGCGCCTGGTGACGGCTGCGCCTCAGGT
TCTGGGCCTGACTCGGAAGGGTGCCTGTGAGCAGAAGAGCTGGCACGCGCAGCTCAGTGGACCA
TCAGTGCCAACCCGTCCTGTACCCTGGCTGAGGGGTGTGCTAAGTGGCAGATTCCCGGTTGGCT
CATCGTAAGGCGTGGCACAAAATCACCATCGAAAGAAAGGGCCTTCGGGATGCCTCTATCTGGT
TATTGCCCTGTAGTGCCAGAGAGAACCACATAGCCTGCTGCTGCTCCTGCCTTTAATTTCCCAA
AGAGTCATCAGACGACCTTGGAGTTTGTTCTGCAAGAGGAGCCAGTAAGGCCTCGTGACTGTGG
TCACCCTCGGAAGCCTTTGACAGCTAGCTGGTGAGGGCGCTCAGTCGGAGGCCCTGGGGAGGCC
CCTGCTAAGCCGAGAAAAGCATTTCTCACAGTGGATTTCCTGGAAGTCAGGGTTGGCCTTTGTA
TTTTGAAGCACAAATAAACTTTATAAAATTTAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_027821

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	116,562,486 - 116,566,624 (+)	NCBI
GRCm38	11	116,671,660 - 116,675,798 (+)	ENTREZGENE
MGSCv37	11	116,532,974 - 116,537,112 (+)	RGD
Celera	11	128,442,824 - 128,447,242 (+)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

GATCTCGTCCTTTCCGAGGTCCTCTGCCGCGTGTTTGGAAGTTATGGCCGCGCGGGTCTGTGGT
GTTCTCCCTGAAAGGCCTAAGCTTTGGGTGATGGCATTGCCTTTTGGCACTCGGGAGACAAGAT
GCAGGTTCCGTCTCAGAAGTAATGGCTGGATCCCTGAAAGCCAACGGGCTCGGTGTGGTCCACC
CGTCAGAAGGCATAGGTAGATGGTGGGCATCTGCCTCAGACATAGTTCTCAAGTTCAGCCAGAA
GAATGCGCGTTGAGCCCTCTGCAGCCCGTGTCGACGGAGGTGTTGTCTCCAGGAAGCATCATGG
AAAGGCGTGGTGGTGCACAAGGGCCTTCAGGATGCCTGCGCCTGGTGACGGCTGCGCCTCAGGT
TCTGGGCCTGACTCGGAAGGGTGCCTGTGAGCAGAAGAGCTGGCACGCGCAGCTCAGTGGACCA
TCAGTGCCAACCCGTCCTGTACCCTGGCTGAGGGGTGTGCTAAGTGGCAGATTCCCGGTTGGCT
CATCGTAAGGCGTGGCACAAAATCACCATCGAAAGAAAGGGCCTTCGGGATGCCTCTATCTGGT
AAGAGCTTCACAGAATTGCAGGGGTTGTGGTTGCTGGGAAGGGTTAGTCTGTTAGATCAGGTGC
TGCAGAATCGAGTGTAACCCTTCCTCCCTTTAGTCTTACTGTGTAGCCCGTGCTGGCCTGCAAC
TTGCTATGTAGACCTGGTTGACCTCAAACTCAGTTTGTGGCCTTTCAGGTGCTGGGATTTTCAT
GTTCTCATTTTGTGTTCCCGAAAAGCCCATAAGCCTATGATGGATTGGTTATCCCTGTCTGAAG
ATTTCAGCTGAGGGAAAATACTCTATTCTGAGGCTTAGGGGTGTGGCTCCATGCTTGAAGAAAT
TTGAGCTTTATAAGGGATCAAGTTAAATAGACTCCATAGAGAGCTGTGTGCCAACCTCCCAAAA
CCTAAGGTCTAGTTGCCTGTTAATCCTCCTCCTTGGGTGCTCTGAGGGCAAAGTCCCTGAGTTA
GCAGAAATGGGCGGGCTGCCAGCACCTGTCCTGTGCTCACTGGAGTGAGACATGCTGGTCACAT
AGTTCTAGAAAATGAATGTCTTCCTTTAGAGGAGGCAGGGATGTAAGGCGTGCCATGAGAATGC
TTGACGACTCTGTCGTTGCCTCTAGCGGTGCTGACATTTAGAAAAGAAGTTGTGGCCCTGGCAG
CCTCCTAAGTATCGTCTCCTTGATGGCACAGAAACAAGTGGCGGGCTTGGGGGGGGGGGGGCTT
TGCTCAGCCCAGCCTTAGTAATGCAGTGTACACTGTGTCCTTTTTCTCTATGGAATCTGGGGGG
TGGATATGGGCTTACACTAAAGTAGCTGTACTTGTGGAATTCTCTGCAGGGTGGCTCTGCTTGC
CTTCACTTCTGAGTGGACTCAGGTTCAGGTCCTCAGGGATTTGGTTGAATATAAATACTCTGAT
GTTTCATGAGAAACCTTTTTTTGGCCACTTACCAGGAACTTCTTAAAACTTTCTTTTAAAAAAA
AAGTTAGCAGCCTGCTTCTGAACTTGGCTGGTGCCTGCCTGTGTGTAGCGCACACAGTGCCTTG
TGATGGCGGCTGGAATCCCAGGACTATCTGATAATGCTTGTTCCTAAAGTTTGTAGTTTTGATC
ACTTAGCTGCCTGTCTCCTTCAGGTTCTTTCCTTGTTTCTAGGTTATTGCCCTGTAGTGCCAGA
GAGAACCACATAGCCTGCTGCTGCTCCTGCCTTTAATTTCCCAAAGAGTCATCAGACGACCTTG
GAGTTTGTTCTGCAAGAGGAGCCAGTAAGGCCTCGTGACTGTGGTCACCCTCGGAAGCCTTTGA
CAGCTAGCTGGTGAGGGCGCTCAGTCGGAGGCCCTGGGGAGGCCCCTGCTAAGCCGAGAAAAGC
ATTTCTCACAGTGGATTTCCTGGAAGTCAGGGTTGGCCTTTGTATTTTGAAGCACAAATAAACT
TTATAAAATTTAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


GenBank Protein	BAB25179	(Get FASTA)	NCBI Sequence Viewer
	BAC29912	(Get FASTA)	NCBI Sequence Viewer
	BAC40650	(Get FASTA)	NCBI Sequence Viewer
	EDL34590	(Get FASTA)	NCBI Sequence Viewer
	EDL34591	(Get FASTA)	NCBI Sequence Viewer

Promoters

RGD ID:

6820174

Promoter ID:

MM_KWN:10677

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000106378, LINCRNA_190, NR_027820, NR_028569, OTTMUST00000008768, OTTMUST00000008769, OTTMUST00000008771, OTTMUST00000008772, OTTMUST00000008773

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	116,532,941 - 116,533,927 (+)	MPROMDB

RGD ID:

8677476

Promoter ID:

EPDNEW_M16769

Type:

multiple initiation site

Name:

1810032O08Rik_1

Description:

Mus musculus RIKEN cDNA 1810032O08 gene , transcript variant2, long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	116,671,669 - 116,671,729	EPDNEW

RGD ID:

15094022

Promoter ID:

EPDNEWNC_M1940

Type:

multiple initiation site

Name:

1810032O08Rik_1

Description:

RIKEN cDNA 1810032O08 gene [Source:MGISymbol;Acc:MGI:1913543]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	116,671,669 - 116,671,729	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1913543	AgrOrtholog
Ensembl Genes	ENSMUSG00000020812	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000106378	ENTREZGENE
	ENSMUST00000139934	ENTREZGENE
	ENSMUST00000142834	ENTREZGENE
MGD	MGI:1913543	ENTREZGENE
NCBI Gene	66293	ENTREZGENE
PhenoGen	Snhg16	PhenoGen
RNAcentral	URS000075B45B	RNACentral
	URS000075EADC	RNACentral
	URS000075ECC1	RNACentral
UniProt	Q8C2B7_MOUSE	UniProtKB/TrEMBL
	Q9D8U9_MOUSE	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-05-28	Snhg16	small nucleolar RNA host gene 16	1810032O08Rik	RIKEN cDNA 1810032O08 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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