Xaf1 (XIAP associated factor 1) - Rat Genome Database
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Gene: Xaf1 (XIAP associated factor 1) Mus musculus
Analyze
Symbol: Xaf1
Name: XIAP associated factor 1
RGD ID: 2290334
MGI Page MGI
Description: Is expressed in embryo. Orthologous to human XAF1 (XIAP associated factor 1); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: BIRC4-binding protein; F-box protein 39; Fbox39; Fbxo39; novel TRAF-type zinc finger protein; RP24-450M24.4; XIAP-associated factor 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
NCBI Annotation Information: Note: On NCBI's build 37.1 (2007), this geneID was incorrectly annotated as Fbxo39. The correct location of Fbxo39 corresponds to geneID: 628100. [03 Mar 2008]
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,192,229 - 72,204,560 (+)NCBIGRCm39mm39
GRCm39 Ensembl1172,192,455 - 72,204,559 (+)Ensembl
GRCm381172,301,461 - 72,313,733 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,301,629 - 72,313,733 (+)EnsemblGRCm38mm10GRCm38
MGSCv371172,115,131 - 72,127,235 (+)NCBIGRCm37mm9NCBIm37
MGSCv361172,117,860 - 72,124,963 (+)NCBImm8
Celera1179,823,114 - 79,835,167 (+)NCBICelera
Cytogenetic Map11B4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
mitochondrion  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:15207275   PMID:16141072   PMID:16141073   PMID:18192275   PMID:18544999   PMID:21873635  
PMID:25456137   PMID:27097110   PMID:29132171   PMID:30842236  


Genomics

Comparative Map Data
Xaf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,192,229 - 72,204,560 (+)NCBIGRCm39mm39
GRCm39 Ensembl1172,192,455 - 72,204,559 (+)Ensembl
GRCm381172,301,461 - 72,313,733 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,301,629 - 72,313,733 (+)EnsemblGRCm38mm10GRCm38
MGSCv371172,115,131 - 72,127,235 (+)NCBIGRCm37mm9NCBIm37
MGSCv361172,117,860 - 72,124,963 (+)NCBImm8
Celera1179,823,114 - 79,835,167 (+)NCBICelera
Cytogenetic Map11B4NCBI
XAF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl176,755,447 - 6,775,647 (+)EnsemblGRCh38hg38GRCh38
GRCh38176,755,408 - 6,775,647 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37176,658,766 - 6,678,966 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,599,880 - 6,619,690 (+)NCBINCBI36hg18NCBI36
Celera176,684,938 - 6,704,750 (+)NCBI
Cytogenetic Map17p13.1NCBI
HuRef176,554,687 - 6,574,528 (+)NCBIHuRef
CHM1_1176,669,375 - 6,689,184 (+)NCBICHM1_1
Xaf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21056,917,284 - 56,929,791 (+)NCBI
Rnor_6.0 Ensembl1058,860,940 - 58,873,674 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01058,860,647 - 58,872,782 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01058,601,058 - 58,613,180 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41059,185,150 - 59,196,549 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1056,046,222 - 56,058,278 (+)NCBICelera
Cytogenetic Map10q24NCBI
Xaf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546712,240,075 - 12,257,595 (+)NCBIChiLan1.0ChiLan1.0
LOC100995017
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1176,774,666 - 6,794,947 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl176,774,951 - 6,794,947 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0176,785,040 - 6,806,177 (+)NCBIMhudiblu_PPA_v0panPan3
XAF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl530,626,356 - 30,637,130 (-)NCBICanFam3.1canFam3CanFam3.1
CanFam3.1530,626,356 - 30,636,731 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Xaf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366771,239,501 - 1,256,332 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XAF1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,117,228 - 6,135,535 (+)NCBI
ChlSab1.1 Ensembl166,118,094 - 6,134,902 (+)Ensembl
Xaf1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247867,270,601 - 7,286,431 (-)NCBI

Position Markers
RH136626  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381172,303,387 - 72,304,785UniSTSGRCm38
MGSCv371172,116,889 - 72,118,287UniSTSGRCm37
Celera1179,824,872 - 79,826,270UniSTS
Cytogenetic Map11B4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116910000072600000Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116910000072600000Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116910000072600000Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116910000072600000Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116910000072600000Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116910000072600000Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116910000072600000Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116910000072600000Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116910000072600000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1106
Count of miRNA genes:602
Interacting mature miRNAs:727
Transcripts:ENSMUST00000094041, ENSMUST00000140842, ENSMUST00000142921, ENSMUST00000146233, ENSMUST00000151440
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI036385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY726623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK130151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EL957551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MN366017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MN366018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MN366019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000094041   ⟹   ENSMUSP00000091583
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1172,301,663 - 72,308,749 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140842   ⟹   ENSMUSP00000121472
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1172,301,639 - 72,312,081 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142921
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1172,301,665 - 72,308,768 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146233   ⟹   ENSMUSP00000123011
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1172,301,630 - 72,313,733 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151440   ⟹   ENSMUSP00000121483
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1172,301,629 - 72,309,061 (+)Ensembl
RefSeq Acc Id: NM_001037713   ⟹   NP_001032802
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,192,455 - 72,204,559 (+)NCBI
GRCm381172,301,629 - 72,313,733 (+)NCBI
MGSCv371172,115,131 - 72,127,235 (+)RGD
Celera1179,823,114 - 79,835,167 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001291153   ⟹   NP_001278082
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,192,455 - 72,204,559 (+)NCBI
GRCm381172,301,629 - 72,313,733 (+)NCBI
Celera1179,823,114 - 79,835,167 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533567   ⟹   XP_006533630
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,192,229 - 72,202,775 (+)NCBI
GRCm381172,301,461 - 72,311,949 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533569   ⟹   XP_006533632
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,192,229 - 72,202,775 (+)NCBI
GRCm381172,301,461 - 72,311,949 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533570   ⟹   XP_006533633
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,192,229 - 72,202,895 (+)NCBI
GRCm381172,301,461 - 72,312,190 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011249084   ⟹   XP_011247386
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,192,229 - 72,196,593 (+)NCBI
GRCm381172,301,461 - 72,305,767 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314613   ⟹   XP_017170102
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,192,229 - 72,204,560 (+)NCBI
GRCm381172,301,461 - 72,313,131 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314614   ⟹   XP_017170103
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,192,229 - 72,204,560 (+)NCBI
GRCm381172,301,461 - 72,313,131 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156775   ⟹   XP_036012668
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,192,229 - 72,204,560 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001032802   ⟸   NM_001037713
- Peptide Label: isoform 1
- UniProtKB: Q5NBU8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533632   ⟸   XM_006533569
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006533630   ⟸   XM_006533567
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006533633   ⟸   XM_006533570
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011247386   ⟸   XM_011249084
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: NP_001278082   ⟸   NM_001291153
- Peptide Label: isoform 2
- UniProtKB: Q5NBU8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017170102   ⟸   XM_017314613
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017170103   ⟸   XM_017314614
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSMUSP00000121483   ⟸   ENSMUST00000151440
RefSeq Acc Id: ENSMUSP00000123011   ⟸   ENSMUST00000146233
RefSeq Acc Id: ENSMUSP00000121472   ⟸   ENSMUST00000140842
RefSeq Acc Id: ENSMUSP00000091583   ⟸   ENSMUST00000094041
RefSeq Acc Id: XP_036012668   ⟸   XM_036156775
- Peptide Label: isoform X6
Protein Domains
XAF1_C

Promoters
RGD ID:6822475
Promoter ID:MM_KWN:8313
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung,   MEF_B4
Transcripts:ENSMUST00000094042,   ENSMUST00000100910,   NM_001037713,   OTTMUST00000013800,   OTTMUST00000013801,   OTTMUST00000084527
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361172,114,891 - 72,115,391 (+)MPROMDB
RGD ID:8675430
Promoter ID:EPDNEW_M15746
Type:initiation region
Name:Xaf1_1
Description:Mus musculus XIAP associated factor 1 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381172,301,654 - 72,301,714EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3772572 AgrOrtholog
Ensembl Genes ENSMUSG00000040483 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000091583 UniProtKB/TrEMBL
  ENSMUSP00000121472 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000121483 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000123011 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000094041 UniProtKB/TrEMBL
  ENSMUST00000140842 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000146233 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000151440 UniProtKB/TrEMBL
InterPro TRAF-like UniProtKB/TrEMBL
  XAF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  XAF1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:327959 UniProtKB/Swiss-Prot
MGD MGI:3772572 ENTREZGENE
NCBI Gene 327959 ENTREZGENE
PANTHER PTHR16295:SF17 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam XAF1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Xaf1 PhenoGen
Superfamily-SCOP SSF49599 UniProtKB/TrEMBL
UniProt A0A6G7MA53_MOUSE UniProtKB/TrEMBL
  A0A6G7MA55_MOUSE UniProtKB/TrEMBL
  A0A6G7MAJ9_MOUSE UniProtKB/TrEMBL
  F6ZMN8_MOUSE UniProtKB/TrEMBL
  Q5NBU8 ENTREZGENE, UniProtKB/Swiss-Prot
  Z4YN17_MOUSE UniProtKB/TrEMBL
UniProt Secondary B7ZD14 UniProtKB/Swiss-Prot
  Q3USK3 UniProtKB/Swiss-Prot
  Q5NBU6 UniProtKB/Swiss-Prot
  Q5NBU7 UniProtKB/Swiss-Prot
  Q5NBU9 UniProtKB/Swiss-Prot