Mccc1os (methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand) - Rat Genome Database

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Gene: Mccc1os (methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand) Mus musculus
Analyze
Symbol: Mccc1os
Name: methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand
RGD ID: 2290330
MGI Page MGI
Description: INTERACTS WITH bisphenol F; triptonide
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: A330050B17Rik
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39336,054,062 - 36,062,977 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl336,053,982 - 36,079,255 (+)EnsemblGRCm39 Ensembl
GRCm38335,999,913 - 36,008,828 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl335,999,833 - 36,025,106 (+)EnsemblGRCm38mm10GRCm38
MGSCv37335,898,835 - 35,907,750 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36336,191,462 - 36,200,377 (+)NCBIMGSCv36mm8
Celera335,882,336 - 35,891,255 (+)NCBICelera
Cytogenetic Map3BNCBI
cM Map317.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol F  (EXP)
triptonide  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:205
Count of miRNA genes:184
Interacting mature miRNAs:199
Transcripts:ENSMUST00000124469, ENSMUST00000137198, ENSMUST00000144118
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
14746977Manh53_mmandible shape 53 (mouse)33592528069925280Mouse
15039332Nmrs6_mNAFLD-associated magnetic resonance shift 6 (mouse)33417074168170741Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
15039336Nmrs2_mNAFLD-associated magnetic resonance shift 2 (mouse)33457610368576103Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
9587784Afw13_mabdominal fat weight QTL 13 (mouse)Not determined33375204567752228Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
1300559Thypr3_mthymocyte proliferative response 3 (mouse)Not determined3452541938525519Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1301114Ssial2_msusceptibility to sialadenitis 2 (mouse)Not determined32017486254180103Mouse
1357689Mdmsc1_mmodifier of muscularity 1 (mouse)Not determined33332720145916479Mouse
18337272Bmd46_mbone mineral density 46, males (mouse)33540742169407421Mouse
1300961Bh4p_mbar holding four paws (mouse)Not determined33183785465837997Mouse
4142092Tgq13_mtriglyceride QTL 13 (mouse)Not determined1828816852288168Mouse
10043882Bwtq13_mbody weight QTL 13 (mouse)Not determined33375204567752228Mouse
10412073Ssen2_msuseptibility to Sendai virus 2 (mouse)Not determined33353546567535615Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
12910781Pwgrq12_mpost-weaning growth rate QTL 12 (mouse)33263576058017363Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301358Eae20_mexperimental allergic encephalomyelitis 20 (mouse)Not determined31163045345630591Mouse
12910778Pwgrq13_mpost-weaning growth rate QTL 13 (mouse)33263576058017363Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000124469
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,054,584 - 36,079,255 (+)Ensembl
GRCm38.p6 Ensembl336,000,435 - 36,025,106 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137198
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,053,982 - 36,061,056 (+)Ensembl
GRCm38.p6 Ensembl335,999,833 - 36,006,907 (+)Ensembl
Ensembl Acc Id: ENSMUST00000144118
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,054,062 - 36,062,977 (+)Ensembl
GRCm38.p6 Ensembl335,999,913 - 36,008,828 (+)Ensembl
Ensembl Acc Id: ENSMUST00000302740
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,065,601 - 36,076,768 (+)Ensembl
Ensembl Acc Id: ENSMUST00000302741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,065,613 - 36,076,775 (+)Ensembl
Ensembl Acc Id: ENSMUST00000302742
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,054,584 - 36,064,302 (+)Ensembl
Ensembl Acc Id: ENSMUST00000302743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,054,589 - 36,064,302 (+)Ensembl
RefSeq Acc Id: NR_029456
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39336,054,062 - 36,062,977 (+)NCBI
GRCm38335,999,913 - 36,008,828 (+)ENTREZGENE
MGSCv37335,898,835 - 35,907,750 (+)RGD
Celera335,882,336 - 35,891,255 (+)RGD
cM Map3 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAC27704 (Get FASTA)   NCBI Sequence Viewer  
  BAC29303 (Get FASTA)   NCBI Sequence Viewer  
  BAC30224 (Get FASTA)   NCBI Sequence Viewer  
  BAE23692 (Get FASTA)   NCBI Sequence Viewer  

Promoters
RGD ID:15092525
Promoter ID:EPDNEWNC_M430
Type:single initiation site
Name:Mccc1os_1
Description:methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), oppositestrand [Source:MGI Symbol;Acc:MGI:3590669]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38336,000,441 - 36,000,501EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086392 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000144118 ENTREZGENE
MGD MGI:3590669 ENTREZGENE
NCBI Gene 654424 ENTREZGENE
PhenoGen Mccc1os PhenoGen
RNAcentral URS000075C484 RNACentral
UniProt Q8BG57_MOUSE UniProtKB/TrEMBL
  Q8CBG1_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-03 Mccc1os  methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand  A330050B17Rik  RIKEN cDNA A330050B17 gene  Symbol and/or name change 5135510 APPROVED