Gm14496 (predicted gene 14496) - Rat Genome Database

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Gene: Gm14496 (predicted gene 14496) Mus musculus
Analyze
No known orthologs.
Symbol: Gm14496
Name: predicted gene 14496
RGD ID: 2289889
MGI Page MGI
Description: Predicted to enable G protein-coupled receptor activity.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: EG623015; hypothetical protein LOC672125; predicted gene, EG623015; vomeronasal 2, receptor family protein
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392181,633,019 - 181,642,880 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2181,632,922 - 181,645,654 (+)EnsemblGRCm39 Ensembl
GRCm382181,991,226 - 182,001,087 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2181,991,129 - 182,003,861 (+)EnsemblGRCm38mm10GRCm38
MGSCv372181,725,931 - 181,736,543 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362181,725,931 - 181,735,792 (+)NCBIMGSCv36mm8
Celera2186,066,786 - 186,076,651 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References
Additional References at PubMed
PMID:21873635  


Genomics

Variants

.
Variants in Gm14496
193 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:203
Count of miRNA genes:127
Interacting mature miRNAs:128
Transcripts:ENSMUST00000071760, ENSMUST00000089788, ENSMUST00000184507
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162433493181755017Mouse
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163486407181755017Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163486407181755017Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164515154181755017Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000071760   ⟹   ENSMUSP00000071670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2181,632,922 - 181,645,654 (+)Ensembl
GRCm38.p6 Ensembl2181,991,129 - 182,003,861 (+)Ensembl
RefSeq Acc Id: ENSMUST00000089788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2181,632,922 - 181,645,654 (+)Ensembl
GRCm38.p6 Ensembl2181,991,129 - 182,003,861 (+)Ensembl
RefSeq Acc Id: ENSMUST00000184507   ⟹   ENSMUSP00000157614
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2181,632,922 - 181,645,654 (+)Ensembl
GRCm38.p6 Ensembl2181,991,129 - 182,003,861 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236373   ⟹   ENSMUSP00000158134
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2181,632,922 - 181,645,654 (+)Ensembl
GRCm38.p6 Ensembl2181,991,129 - 182,003,861 (+)Ensembl
RefSeq Acc Id: NM_001205282   ⟹   NP_001192211
RefSeq Status: INFERRED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,633,019 - 181,642,880 (+)NCBI
GRCm382181,991,226 - 182,001,087 (+)ENTREZGENE
Celera2186,066,786 - 186,076,651 (+)ENTREZGENE
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017319216   ⟹   XP_017174705
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,633,019 - 181,641,993 (+)NCBI
GRCm382181,991,226 - 182,000,200 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319217   ⟹   XP_017174706
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,633,019 - 181,641,993 (+)NCBI
GRCm382181,991,226 - 182,000,200 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251979   ⟹   XP_030107839
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,633,019 - 181,642,880 (+)NCBI
GRCm382181,991,226 - 182,001,087 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251980   ⟹   XP_030107840
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,633,019 - 181,642,880 (+)NCBI
GRCm382181,991,226 - 182,001,087 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251981   ⟹   XP_030107841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,633,019 - 181,642,880 (+)NCBI
GRCm382181,991,226 - 182,001,087 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036162507   ⟹   XP_036018400
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,633,019 - 181,642,880 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001192211   ⟸   NM_001205282
- Peptide Label: precursor
- UniProtKB: K7N5U4 (UniProtKB/TrEMBL),   A0A494B9E1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174705   ⟸   XM_017319216
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017174706   ⟸   XM_017319217
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_030107841   ⟸   XM_030251981
- Peptide Label: isoform X3
- UniProtKB: A0A494B9E1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030107840   ⟸   XM_030251980
- Peptide Label: isoform X2
- UniProtKB: A0A494BAK9 (UniProtKB/TrEMBL),   A0A494B9E1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030107839   ⟸   XM_030251979
- Peptide Label: isoform X1
- UniProtKB: A0A494B9E1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000157614   ⟸   ENSMUST00000184507
RefSeq Acc Id: ENSMUSP00000071670   ⟸   ENSMUST00000071760
RefSeq Acc Id: ENSMUSP00000158134   ⟸   ENSMUST00000236373
RefSeq Acc Id: XP_036018400   ⟸   XM_036162507
- Peptide Label: isoform X4
- UniProtKB: A0A494B9E1 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-K7N5U4-F1-model_v2 AlphaFold K7N5U4 1-849 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3769929 AgrOrtholog
Ensembl Genes ENSMUSG00000098505 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000071760 ENTREZGENE
  ENSMUST00000071760.8 UniProtKB/TrEMBL
  ENSMUST00000184507 ENTREZGENE
  ENSMUST00000184507.3 UniProtKB/TrEMBL
  ENSMUST00000236373 ENTREZGENE
  ENSMUST00000236373.2 UniProtKB/TrEMBL
Gene3D-CATH 2.10.50.30 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  GPCR_3 UniProtKB/TrEMBL
  GPCR_3_9-Cys_dom UniProtKB/TrEMBL
  GPCR_3_9-Cys_sf UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/TrEMBL
  GPCR_3_Ca_sens_rcpt-rel UniProtKB/TrEMBL
  GPCR_3_vmron_rcpt_2 UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
KEGG Report mmu:672125 UniProtKB/TrEMBL
MGD MGI:3769929 ENTREZGENE
NCBI Gene 672125 ENTREZGENE
PANTHER PTHR24061 UniProtKB/TrEMBL
  VOMERONASAL 2, RECEPTOR 10-RELATED UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
  ANF_receptor UniProtKB/TrEMBL
  NCD3G UniProtKB/TrEMBL
PhenoGen Gm14496 PhenoGen
PRINTS GPCRMGR UniProtKB/TrEMBL
  VOMERONASL2R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_4 UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/TrEMBL
UniProt A0A494B9E1 ENTREZGENE, UniProtKB/TrEMBL
  A0A494BAK9 ENTREZGENE, UniProtKB/TrEMBL
  K7N5U4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-26 Gm14496  predicted gene 14496  EG623015  predicted gene, EG623015  Data merged from RGD:1621100 737654 PROVISIONAL