Camk2d (calcium/calmodulin-dependent protein kinase II delta) - Rat Genome Database

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Gene: Camk2d (calcium/calmodulin-dependent protein kinase II delta) Rattus norvegicus
Analyze
Symbol: Camk2d
Name: calcium/calmodulin-dependent protein kinase II delta
RGD ID: 2263
Description: Enables calmodulin-dependent protein kinase activity; nitric-oxide synthase binding activity; and transmembrane transporter binding activity. Involved in several processes, including positive regulation of intracellular signal transduction; protein phosphorylation; and regulation of calcium ion transmembrane transport. Located in cytosol; nucleus; and perinuclear region of cytoplasm. Part of protein-containing complex. Used to study epilepsy. Orthologous to human CAMK2D (calcium/calmodulin dependent protein kinase II delta); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; type II interferon signaling pathway; calcium/calcium-mediated signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Ca++/calmodulin-dependent protein kinase 2 delta subunit; Ca++/calmodulin-dependent protein kinase II delta subunit; Ca++/calmodulin-dependent protein kinase II, delta subunit; calcium/calmodulin-dependent protein kinase (CaM kinase) II delta; calcium/calmodulin-dependent protein kinase II, delta; calcium/calmodulin-dependent protein kinase type II delta chain; calcium/calmodulin-dependent protein kinase type II subunit delta; caM kinase II subunit delta; caM-kinase II delta chain; caMK-II subunit delta; CAMK1; Camk2; Camki; MGC124639; RATCAMKI
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Is Marker For: QTLs:   Bp10   Bp158  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22215,023,785 - 215,287,351 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2215,024,004 - 215,286,178 (+)Ensembl
Rnor_6.02230,900,907 - 231,132,207 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2230,901,126 - 231,132,039 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02250,251,866 - 250,484,590 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42223,840,650 - 224,108,082 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12223,827,329 - 224,097,854 (+)NCBI
Celera2207,356,625 - 207,618,006 (+)NCBICelera
Cytogenetic Map2q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(S)-amphetamine  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
astemizole  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (EXP)
calcium atom  (EXP)
calcium(0)  (EXP)
carbamazepine  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
cisplatin  (EXP,ISO)
clozapine  (EXP)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDT  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diazinon  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
furan  (EXP)
genistein  (EXP)
gentamycin  (EXP)
glyphosate  (ISO)
haloperidol  (EXP)
indometacin  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
ivermectin  (ISO)
KN-93  (EXP)
L-methionine  (ISO)
lead diacetate  (EXP)
lead(0)  (EXP,ISO)
lead(2+)  (EXP,ISO)
mercury dibromide  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
nickel dichloride  (EXP)
oxaliplatin  (EXP)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
phenethyl caffeate  (EXP)
phenylephrine  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium chloride  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
succimer  (ISO)
sunitinib  (ISO)
theophylline  (ISO)
topotecan  (EXP)
torcetrapib  (ISO)
tributylstannane  (ISO)
triclosan  (ISO)
triptonide  (ISO)
uranium atom  (ISO)
valproic acid  (EXP)
vinclozolin  (EXP)
vincristine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
calcium ion transport  (ISO)
cardiac muscle cell contraction  (IDA)
cardiac muscle contraction  (ISO)
cell growth involved in cardiac muscle cell development  (IMP)
cellular potassium ion homeostasis  (IMP)
endoplasmic reticulum calcium ion homeostasis  (IDA)
G1/S transition of mitotic cell cycle  (ISO)
negative regulation of sodium ion transmembrane transport  (ISO)
negative regulation of sodium ion transmembrane transporter activity  (ISO)
peptidyl-serine phosphorylation  (IDA,ISO)
peptidyl-threonine phosphorylation  (IDA,ISO)
positive regulation of cardiac muscle cell apoptotic process  (IMP)
positive regulation of cardiac muscle hypertrophy  (ISO,ISS)
positive regulation of DNA biosynthetic process  (IMP)
positive regulation of ERK1 and ERK2 cascade  (IMP)
positive regulation of G2/M transition of mitotic cell cycle  (IMP)
positive regulation of Rac protein signal transduction  (IMP)
positive regulation of smooth muscle cell migration  (IMP)
positive regulation of vascular associated smooth muscle cell proliferation  (IMP)
protein autophosphorylation  (IDA,ISO)
protein phosphorylation  (IDA,ISO,ISS)
regulation of calcium ion transmembrane transport via high voltage-gated calcium channel  (IDA)
regulation of cardiac muscle cell action potential  (IDA)
regulation of cardiac muscle cell action potential involved in regulation of contraction  (IC)
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion  (IC)
regulation of cell communication by electrical coupling  (IDA)
regulation of cell communication by electrical coupling involved in cardiac conduction  (IC)
regulation of cellular localization  (ISO,ISS)
regulation of membrane depolarization  (ISO)
regulation of protein localization to plasma membrane  (IGI)
regulation of relaxation of cardiac muscle  (IDA,ISO)
regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum  (IDA)
regulation of sodium ion transport  (ISO)
relaxation of cardiac muscle  (IDA)
response to hypoxia  (IMP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
seizures  (IAGP)
References

References - curated
1. Ashpole NM, etal., J Biol Chem. 2012 Jun 8;287(24):19856-69. doi: 10.1074/jbc.M111.322537. Epub 2012 Apr 18.
2. Balla Z, etal., J Biol Chem 2002 Jun 14;277(24):21306-14.
3. Cha MJ, etal., Biochem Biophys Res Commun. 2013 Jun 14;435(4):720-6. doi: 10.1016/j.bbrc.2013.05.050. Epub 2013 May 20.
4. Chang L, etal., Circulation. 2007 Dec 18;116(25):2976-83. Epub 2007 Dec 3.
5. Coultrap SJ and Bayer KU, Trends Neurosci. 2012 Oct;35(10):607-18. doi: 10.1016/j.tins.2012.05.003. Epub 2012 Jun 19.
6. De Felice FG, etal., Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1971-6. doi: 10.1073/pnas.0809158106. Epub 2009 Feb 2.
7. Deng AY, etal., J Clin Invest 1994 Jul;94(1):431-6
8. Deng AY, etal., Mamm Genome 1997 Oct;8(10):731-5.
9. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
10. Ginnan R, etal., Biochem J. 2012 May 15;444(1):105-14. doi: 10.1042/BJ20120152.
11. GOA data from the GO Consortium
12. Grueter CE, etal., Biochemistry. 2008 Feb 12;47(6):1760-7. Epub 2008 Jan 19.
13. Hamdani N, etal., Circ Res. 2013 Feb 15;112(4):664-74. doi: 10.1161/CIRCRESAHA.111.300105. Epub 2013 Jan 2.
14. House SJ, etal., Am J Physiol Cell Physiol. 2007 Jun;292(6):C2276-87. Epub 2007 Jan 31.
15. Jones RJ, etal., Am J Physiol Heart Circ Physiol. 2007 Jun;292(6):H2634-42. Epub 2007 Feb 9.
16. Li C, etal., Biochem Biophys Res Commun. 2011 May 27;409(1):125-30. Epub 2011 May 3.
17. Maier LS, etal., Circ Res. 2003 May 2;92(8):904-11. Epub 2003 Apr 3.
18. Mayer P, etal., Basic Res Cardiol 1995 Sep-Oct;90(5):372-9.
19. Mercure MZ, etal., Am J Physiol Cell Physiol. 2008 Jun;294(6):C1465-75. Epub 2008 Apr 2.
20. MGD data from the GO Consortium
21. Mishra-Gorur K, etal., J Biol Chem 2002 Sep 13;277(37):33537-40. Epub 2002 Jul 26.
22. NCBI rat LocusLink and RefSeq merged data July 26, 2002
23. Pipeline to import KEGG annotations from KEGG into RGD
24. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
25. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
26. RGD automated import pipeline for gene-chemical interactions
27. Rijkers K, etal., Epilepsy Res. 2010 Sep;91(1):28-34. Epub 2010 Jul 16.
28. Rokita AG and Anderson ME, Circulation. 2012 Oct 23;126(17):2125-39. doi: 10.1161/CIRCULATIONAHA.112.124990.
29. Schworer CM, etal., J Biol Chem 1993 Jul 5;268(19):14443-9.
30. Szpirer C, etal., Mamm Genome 1998 Sep;9(9):721-34
31. Takeuchi Y, etal., J Neurochem. 1999 Feb;72(2):815-25.
32. Tobimatsu T and Fujisawa H, J Biol Chem 1989 Oct 25;264(30):17907-12.
33. Zhang T, etal., Circ Res. 2003 May 2;92(8):912-9. Epub 2003 Apr 3.
Additional References at PubMed
PMID:8130281   PMID:8224201   PMID:10753652   PMID:11264466   PMID:12147342   PMID:12477932   PMID:12619878   PMID:12660151   PMID:14761894   PMID:15489334   PMID:15631885   PMID:15652482  
PMID:17179159   PMID:17234969   PMID:17873280   PMID:18096823   PMID:18721804   PMID:19422373   PMID:19602725   PMID:19883656   PMID:19910575   PMID:19946888   PMID:20124353   PMID:20442409  
PMID:20668654   PMID:20877009   PMID:21486818   PMID:21575598   PMID:21677263   PMID:21998325   PMID:22048920   PMID:22553113   PMID:22871113   PMID:23238742   PMID:23360843   PMID:23585120  
PMID:24003228   PMID:24106266   PMID:24347176   PMID:25416956   PMID:25539453   PMID:25820554   PMID:25931508   PMID:26067684   PMID:27199283   PMID:27940402   PMID:29476059   PMID:30462989  
PMID:31051256   PMID:31515488   PMID:31584202   PMID:33281190  


Genomics

Candidate Gene Status
Camk2d is a candidate Gene for QTL Bp132
Camk2d is a candidate Gene for QTL Eau5
Comparative Map Data
Camk2d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22215,023,785 - 215,287,351 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2215,024,004 - 215,286,178 (+)Ensembl
Rnor_6.02230,900,907 - 231,132,207 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2230,901,126 - 231,132,039 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02250,251,866 - 250,484,590 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42223,840,650 - 224,108,082 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12223,827,329 - 224,097,854 (+)NCBI
Celera2207,356,625 - 207,618,006 (+)NCBICelera
Cytogenetic Map2q42NCBI
CAMK2D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4113,418,054 - 113,761,927 (-)EnsemblGRCh38hg38GRCh38
GRCh384113,451,032 - 113,762,177 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh374114,372,188 - 114,682,894 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364114,593,021 - 114,902,177 (-)NCBINCBI36hg18NCBI36
Build 344114,731,176 - 115,040,332NCBI
Celera4111,663,868 - 111,974,821 (-)NCBI
Cytogenetic Map4q26NCBI
HuRef4110,100,535 - 110,411,382 (-)NCBIHuRef
CHM1_14114,348,616 - 114,659,536 (-)NCBICHM1_1
Camk2d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393126,389,136 - 126,639,975 (+)NCBIGRCm39mm39
GRCm39 Ensembl3126,389,951 - 126,639,975 (+)Ensembl
GRCm383126,595,487 - 126,846,326 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3126,596,302 - 126,846,326 (+)EnsemblGRCm38mm10GRCm38
MGSCv373126,299,891 - 126,547,972 (+)NCBIGRCm37mm9NCBIm37
MGSCv363126,588,995 - 126,837,076 (+)NCBImm8
Celera3133,054,816 - 133,307,418 (+)NCBICelera
Cytogenetic Map3G1- G2NCBI
Camk2d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542825,583,501 - 25,880,395 (+)NCBIChiLan1.0ChiLan1.0
CAMK2D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14116,520,393 - 116,836,244 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4116,523,850 - 116,835,387 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04105,957,773 - 106,271,887 (-)NCBIMhudiblu_PPA_v0panPan3
CAMK2D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13233,223,093 - 33,525,783 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3233,224,716 - 33,525,371 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha328,506,405 - 8,809,096 (+)NCBI
ROS_Cfam_1.03233,451,334 - 33,753,342 (-)NCBI
UMICH_Zoey_3.13233,428,910 - 33,730,363 (-)NCBI
UNSW_CanFamBas_1.03233,198,098 - 33,499,625 (-)NCBI
UU_Cfam_GSD_1.0326,362,791 - 6,664,281 (+)NCBI
Camk2d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053017,383,235 - 7,682,967 (+)NCBI
SpeTri2.0NW_0049365634,226,412 - 4,526,139 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAMK2D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8108,710,660 - 109,228,901 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18108,916,019 - 109,221,317 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28116,954,755 - 117,261,929 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CAMK2D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1761,240,584 - 61,552,562 (-)NCBI
Vero_WHO_p1.0NW_02366603740,007,639 - 40,323,758 (-)NCBI

Position Markers
D2Arb25   No map positions available.
D2Got152  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,185,542 - 215,185,822 (+)MAPPERmRatBN7.2
Rnor_6.02231,015,777 - 231,016,056NCBIRnor6.0
Rnor_5.02250,365,368 - 250,365,647UniSTSRnor5.0
RGSC_v3.42224,007,949 - 224,008,228UniSTSRGSC3.4
RGSC_v3.42224,007,948 - 224,008,228RGDRGSC3.4
RGSC_v3.12223,994,629 - 223,994,908RGD
Celera2207,517,747 - 207,518,026UniSTS
RH 3.4 Map21546.5UniSTS
RH 3.4 Map21546.5RGD
RH 2.0 Map21136.0RGD
Cytogenetic Map2q42-q43UniSTS
D2Got155  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,169,809 - 215,169,980 (+)MAPPERmRatBN7.2
Rnor_6.02231,091,285 - 231,091,453NCBIRnor6.0
Rnor_6.02231,000,016 - 231,000,184NCBIRnor6.0
Rnor_5.02250,349,607 - 250,349,775UniSTSRnor5.0
Rnor_5.02250,441,045 - 250,441,213UniSTSRnor5.0
RGSC_v3.42223,991,596 - 223,991,764UniSTSRGSC3.4
RGSC_v3.42223,991,595 - 223,991,764RGDRGSC3.4
RGSC_v3.12223,978,276 - 223,978,444RGD
Celera2207,502,015 - 207,502,184UniSTS
RH 3.4 Map21546.6RGD
RH 3.4 Map21546.6UniSTS
RH 2.0 Map21141.7RGD
Cytogenetic Map2q42-q43UniSTS
D2Got192  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,185,563 - 215,185,814 (+)MAPPERmRatBN7.2
Rnor_6.02231,015,798 - 231,016,048NCBIRnor6.0
Rnor_5.02250,365,389 - 250,365,639UniSTSRnor5.0
RGSC_v3.42224,007,969 - 224,008,220RGDRGSC3.4
RGSC_v3.42224,007,970 - 224,008,220UniSTSRGSC3.4
RGSC_v3.12223,994,649 - 223,994,900RGD
Celera2207,517,768 - 207,518,018UniSTS
RH 2.0 Map21153.8RGD
Cytogenetic Map2q42-q43UniSTS
D2Mco44  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map21547.0RGD
RH 3.4 Map21547.0UniSTS
Cytogenetic Map2q42-q43UniSTS
D2Wox40  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2q42-q43UniSTS
RH133136  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,248,511 - 215,248,698 (+)MAPPERmRatBN7.2
Rnor_6.02231,085,029 - 231,085,215NCBIRnor6.0
Rnor_5.02250,434,789 - 250,434,975UniSTSRnor5.0
Celera2207,580,701 - 207,580,887UniSTS
RH 3.4 Map21539.3UniSTS
Cytogenetic Map2q42-q43UniSTS
RH134058  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.02250,485,255 - 250,485,468NCBIRnor5.0
RGSC_v3.42224,110,253 - 224,110,465UniSTSRGSC3.4
Celera2207,620,177 - 207,620,389UniSTS
RH 3.4 Map21546.6UniSTS
Cytogenetic Map2q42-q43UniSTS
RH94737  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,287,052 - 215,287,219 (+)MAPPERmRatBN7.2
Rnor_6.02231,131,742 - 231,131,908NCBIRnor6.0
Rnor_5.02250,484,125 - 250,484,291UniSTSRnor5.0
RGSC_v3.42224,109,488 - 224,109,654UniSTSRGSC3.4
Celera2207,619,412 - 207,619,578UniSTS
Cytogenetic Map2q42-q43UniSTS
RH144538  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,283,280 - 215,283,498 (+)MAPPERmRatBN7.2
Rnor_6.02231,127,966 - 231,128,183NCBIRnor6.0
Rnor_5.02250,480,349 - 250,480,566UniSTSRnor5.0
RGSC_v3.42224,105,712 - 224,105,929UniSTSRGSC3.4
Celera2207,615,636 - 207,615,853UniSTS
RH 3.4 Map21546.6UniSTS
Cytogenetic Map2q42-q43UniSTS
RH138932  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,064,808 - 215,064,958 (+)MAPPERmRatBN7.2
Rnor_6.02230,849,019 - 230,849,168NCBIRnor6.0
Rnor_5.02250,199,978 - 250,200,127UniSTSRnor5.0
RGSC_v3.42223,883,645 - 223,883,794UniSTSRGSC3.4
Celera2207,397,248 - 207,397,397UniSTS
RH 3.4 Map21546.5UniSTS
Cytogenetic Map2q42-q43UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631203Gluco14Glucose level QTL 140.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)2206665645219003804Rat
61458Bp10Blood pressure QTL 103.42arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189020722215287351Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2189599258218414891Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1298083Bp158Blood pressure QTL 1582.62arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189020722215287351Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
2299161Iddm33Insulin dependent diabetes mellitus QTL 332.98blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2206312063220876787Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2185876309219753474Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2185876309219753474Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2186
Count of miRNA genes:299
Interacting mature miRNAs:374
Transcripts:ENSRNOT00000015564, ENSRNOT00000016026, ENSRNOT00000065307, ENSRNOT00000068198
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 20 4 19 4 8 11 68 34 40 11 8
Low 37 37 37 6 1 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_012519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC107562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J05072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L13406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L13407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L13408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S69668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S69671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S69672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S81421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X75774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X77192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X77193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X77194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X77195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000015564   ⟹   ENSRNOP00000015559
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,024,004 - 215,286,178 (+)Ensembl
Rnor_6.0 Ensembl2230,901,264 - 231,132,039 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000016026   ⟹   ENSRNOP00000016026
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,024,004 - 215,285,651 (+)Ensembl
Rnor_6.0 Ensembl2230,901,126 - 231,130,336 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000068198   ⟹   ENSRNOP00000062625
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,024,004 - 215,285,651 (+)Ensembl
Rnor_6.0 Ensembl2230,901,348 - 231,128,684 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094868   ⟹   ENSRNOP00000076650
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,024,127 - 215,283,682 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103949   ⟹   ENSRNOP00000095840
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,024,004 - 215,286,178 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107724   ⟹   ENSRNOP00000097734
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,024,127 - 215,283,682 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107819   ⟹   ENSRNOP00000085967
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,024,004 - 215,286,178 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110364   ⟹   ENSRNOP00000084623
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,024,004 - 215,286,178 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111056   ⟹   ENSRNOP00000082444
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,024,127 - 215,283,682 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118198   ⟹   ENSRNOP00000094539
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,024,004 - 215,286,178 (+)Ensembl
RefSeq Acc Id: NM_012519   ⟹   NP_036651
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,024,004 - 215,285,651 (+)NCBI
Rnor_6.02230,901,126 - 231,130,336 (+)NCBI
Rnor_5.02250,251,866 - 250,484,590 (+)NCBI
RGSC_v3.42223,840,650 - 224,108,082 (+)RGD
Celera2207,356,625 - 207,618,006 (+)RGD
Sequence:
RefSeq Acc Id: XM_006233285   ⟹   XP_006233347
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Rnor_5.02250,251,866 - 250,484,590 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008761452   ⟹   XP_008759674
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590604   ⟹   XP_017446093
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590605   ⟹   XP_017446094
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,129,404 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590607   ⟹   XP_017446096
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590608   ⟹   XP_017446097
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590609   ⟹   XP_017446098
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590610   ⟹   XP_017446099
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590612   ⟹   XP_017446101
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590613   ⟹   XP_017446102
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590614   ⟹   XP_017446103
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590616   ⟹   XP_017446105
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590618   ⟹   XP_017446107
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
Rnor_6.02230,900,907 - 231,130,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590624   ⟹   XP_017446113
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,282,781 (+)NCBI
Rnor_6.02230,900,907 - 231,127,466 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039101686   ⟹   XP_038957614
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101687   ⟹   XP_038957615
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101688   ⟹   XP_038957616
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101689   ⟹   XP_038957617
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101690   ⟹   XP_038957618
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101691   ⟹   XP_038957619
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101692   ⟹   XP_038957620
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101693   ⟹   XP_038957621
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101694   ⟹   XP_038957622
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101696   ⟹   XP_038957624
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101697   ⟹   XP_038957625
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101698   ⟹   XP_038957626
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101699   ⟹   XP_038957627
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101700   ⟹   XP_038957628
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101701   ⟹   XP_038957629
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101702   ⟹   XP_038957630
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101703   ⟹   XP_038957631
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101704   ⟹   XP_038957632
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101705   ⟹   XP_038957633
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,282,781 (+)NCBI
RefSeq Acc Id: XM_039101706   ⟹   XP_038957634
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,050,036 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101707   ⟹   XP_038957635
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,024,196 - 215,285,666 (+)NCBI
RefSeq Acc Id: XM_039101708   ⟹   XP_038957636
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,211,977 - 215,285,666 (+)NCBI
RefSeq Acc Id: XR_001836410
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,287,351 (+)NCBI
Rnor_6.02230,900,907 - 231,132,207 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001836411
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,023,785 - 215,287,351 (+)NCBI
Rnor_6.02230,900,907 - 231,132,207 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_036651 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233347 (Get FASTA)   NCBI Sequence Viewer  
  XP_008759674 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446093 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446094 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446096 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446097 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446098 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446099 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446101 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446102 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446103 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446105 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446107 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446113 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957614 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957615 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957616 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957617 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957618 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957619 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957620 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957621 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957622 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957624 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957625 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957626 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957627 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957628 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957629 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957630 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957631 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957632 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957633 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957634 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957635 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957636 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA40866 (Get FASTA)   NCBI Sequence Viewer  
  AAA41479 (Get FASTA)   NCBI Sequence Viewer  
  AAA41480 (Get FASTA)   NCBI Sequence Viewer  
  AAA41481 (Get FASTA)   NCBI Sequence Viewer  
  AAB30235 (Get FASTA)   NCBI Sequence Viewer  
  AAB30236 (Get FASTA)   NCBI Sequence Viewer  
  AAB30237 (Get FASTA)   NCBI Sequence Viewer  
  AAB36089 (Get FASTA)   NCBI Sequence Viewer  
  AAI07563 (Get FASTA)   NCBI Sequence Viewer  
  CAA53395 (Get FASTA)   NCBI Sequence Viewer  
  CAA54412 (Get FASTA)   NCBI Sequence Viewer  
  CAA54413 (Get FASTA)   NCBI Sequence Viewer  
  CAA54414 (Get FASTA)   NCBI Sequence Viewer  
  CAA54415 (Get FASTA)   NCBI Sequence Viewer  
  EDL82144 (Get FASTA)   NCBI Sequence Viewer  
  EDL82145 (Get FASTA)   NCBI Sequence Viewer  
  EDL82146 (Get FASTA)   NCBI Sequence Viewer  
  P15791 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_036651   ⟸   NM_012519
- UniProtKB: P15791 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006233347   ⟸   XM_006233285
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_008759674   ⟸   XM_008761452
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017446093   ⟸   XM_017590604
- Peptide Label: isoform X1
- UniProtKB: P15791 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017446102   ⟸   XM_017590613
- Peptide Label: isoform X10
- UniProtKB: P15791 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017446098   ⟸   XM_017590609
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017446099   ⟸   XM_017590610
- Peptide Label: isoform X6
- UniProtKB: P15791 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017446105   ⟸   XM_017590616
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_017446096   ⟸   XM_017590607
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017446107   ⟸   XM_017590618
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_017446101   ⟸   XM_017590612
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017446103   ⟸   XM_017590614
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017446097   ⟸   XM_017590608
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017446094   ⟸   XM_017590605
- Peptide Label: isoform X1
- UniProtKB: P15791 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017446113   ⟸   XM_017590624
- Peptide Label: isoform X32
- Sequence:
RefSeq Acc Id: ENSRNOP00000016026   ⟸   ENSRNOT00000016026
RefSeq Acc Id: ENSRNOP00000062625   ⟸   ENSRNOT00000068198
RefSeq Acc Id: ENSRNOP00000015559   ⟸   ENSRNOT00000015564
RefSeq Acc Id: XP_038957620   ⟸   XM_039101692
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038957629   ⟸   XM_039101701
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038957624   ⟸   XM_039101696
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038957615   ⟸   XM_039101687
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038957627   ⟸   XM_039101699
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038957621   ⟸   XM_039101693
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038957631   ⟸   XM_039101703
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038957630   ⟸   XM_039101702
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038957619   ⟸   XM_039101691
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038957614   ⟸   XM_039101686
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038957626   ⟸   XM_039101698
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038957617   ⟸   XM_039101689
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038957628   ⟸   XM_039101700
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038957625   ⟸   XM_039101697
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038957632   ⟸   XM_039101704
- Peptide Label: isoform X27
RefSeq Acc Id: XP_038957616   ⟸   XM_039101688
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038957622   ⟸   XM_039101694
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038957618   ⟸   XM_039101690
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038957633   ⟸   XM_039101705
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038957635   ⟸   XM_039101707
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038957634   ⟸   XM_039101706
- Peptide Label: isoform X29
RefSeq Acc Id: XP_038957636   ⟸   XM_039101708
- Peptide Label: isoform X31
RefSeq Acc Id: ENSRNOP00000094539   ⟸   ENSRNOT00000118198
RefSeq Acc Id: ENSRNOP00000095840   ⟸   ENSRNOT00000103949
RefSeq Acc Id: ENSRNOP00000076650   ⟸   ENSRNOT00000094868
RefSeq Acc Id: ENSRNOP00000085967   ⟸   ENSRNOT00000107819
RefSeq Acc Id: ENSRNOP00000084623   ⟸   ENSRNOT00000110364
RefSeq Acc Id: ENSRNOP00000082444   ⟸   ENSRNOT00000111056
RefSeq Acc Id: ENSRNOP00000097734   ⟸   ENSRNOT00000107724
Protein Domains
Protein kinase

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691739
Promoter ID:EPDNEW_R2264
Type:initiation region
Name:Camk2d_1
Description:calcium/calmodulin-dependent protein kinase II delta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02230,901,218 - 230,901,278EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2263 AgrOrtholog
Ensembl Genes ENSRNOG00000011589 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000015559 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000016026 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000062625 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015564 UniProtKB/Swiss-Prot
  ENSRNOT00000016026 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000068198 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7939424 IMAGE-MGC_LOAD
InterPro Ca/CaM-dep_prot_kinase-assoc UniProtKB/Swiss-Prot
  Kinase-like_dom_sf UniProtKB/Swiss-Prot
  NTF2-like_dom_sf UniProtKB/Swiss-Prot
  Prot_kinase_dom UniProtKB/Swiss-Prot
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot
KEGG Report rno:24246 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124639 IMAGE-MGC_LOAD
NCBI Gene 24246 ENTREZGENE
Pfam CaMKII_AD UniProtKB/Swiss-Prot
  Pkinase UniProtKB/Swiss-Prot
PhenoGen Camk2d PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot
SMART S_TKc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54427 UniProtKB/Swiss-Prot
  SSF56112 UniProtKB/Swiss-Prot
UniProt KCC2D_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary P97915 UniProtKB/Swiss-Prot
  P97916 UniProtKB/Swiss-Prot
  Q3B7L0 UniProtKB/Swiss-Prot
  Q63904 UniProtKB/Swiss-Prot
  Q63905 UniProtKB/Swiss-Prot
  Q63906 UniProtKB/Swiss-Prot
  Q63907 UniProtKB/Swiss-Prot
  Q63908 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-11-11 Camk2d  calcium/calmodulin-dependent protein kinase II delta  Camk2d  calcium/calmodulin-dependent protein kinase (CaM kinase) II delta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Camk2d  calcium/calmodulin-dependent protein kinase (CaM kinase) II delta  Camk2d  calcium/calmodulin-dependent protein kinase II, delta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2003-04-09 Camk2d  calcium/calmodulin-dependent protein kinase II, delta    Ca++/calmodulin-dependent protein kinase 2 delta subunit  Name updated 629478 APPROVED
2002-06-10 Camk2d  Ca++/calmodulin-dependent protein kinase 2 delta subunit      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed most abundantly in nervous tissue 61038
gene_expression expressed most abundantly in nervous tissue 68909
gene_expression delta 1 isoform expressed in brain; delta 2 and delta 3 isoforms expressed in aorta; delta 4 isoform expressed in skeletal muscle 1298725
gene_process may play a role in neurotransmission or synaptic plasticity  
gene_process regulates potassium currents in brain capillary endothelial cells under hypoxic conditions 724615
gene_protein autophosphorylated upon exposure to hypoxic conditions 724615
gene_transcript alternatively spliced isoforms expressed in different tissues 1298725