S100g (S100 calcium binding protein G) - Rat Genome Database

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Gene: S100g (S100 calcium binding protein G) Rattus norvegicus
Analyze
Symbol: S100g
Name: S100 calcium binding protein G
RGD ID: 2253
Description: Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Involved in response to organic cyclic compound. Predicted to be located in apical plasma membrane and basolateral plasma membrane. Predicted to be active in cytoplasm and extracellular space. Orthologous to human S100G (S100 calcium binding protein G); PARTICIPATES IN calcium/calcium-mediated signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 9 kDa CaBP; CaBP; Calb3; calbindin 3; calbindin 3, (vitamin D-dependent calcium binding protein); calbindin-D9K; Calcium-binding protein intestinal vitamin D-dependent (9-kDa CaBP); calcium-binding protein, intestinal, vitamin D-dependent (9-kDa CaBP); Cbpi; cholecalcin; MGC72928; protein S100-G; RNCALBD9; S100 calcium-binding protein G; vitamin D-dependent calcium-binding protein, intestinal
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X31,705,853 - 31,708,422 (+)NCBImRatBN7.2
mRatBN7.2 EnsemblX31,705,866 - 31,708,433 (+)Ensembl
Rnor_6.0X33,442,820 - 33,445,714 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX33,443,186 - 33,445,709 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X33,790,619 - 33,793,188 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X52,446,817 - 52,449,342 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X52,500,285 - 52,502,811 (+)NCBI
CeleraX32,019,786 - 32,022,301 (+)NCBICelera
Cytogenetic MapXq14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-nonylphenol  (EXP)
4-tert-Octylphenol  (EXP)
acetamide  (EXP)
aflatoxin B1  (EXP)
alfacalcidol  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
benzo[a]pyrene  (EXP)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
Butylparaben  (EXP)
cadmium dichloride  (EXP)
calcitriol  (EXP,ISO)
calcium atom  (EXP)
calcium(0)  (EXP)
capsaicin  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
curcumin  (EXP)
cyclosporin A  (EXP)
dextran sulfate  (ISO)
diethylstilbestrol  (EXP,ISO)
dimethylarsinic acid  (ISO)
dioxygen  (EXP,ISO)
folic acid  (ISO)
fulvestrant  (EXP,ISO)
furosemide  (ISO)
genistein  (EXP)
gentamycin  (ISO)
hydrogen peroxide  (EXP)
irinotecan  (EXP)
Isobutylparaben  (EXP)
Isopropylparaben  (EXP)
L-ascorbic acid  (ISO)
L-methionine  (ISO)
lithocholic acid  (EXP,ISO)
melatonin  (EXP)
methoxychlor  (EXP)
methylarsonic acid  (ISO)
mifepristone  (EXP,ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nitrofen  (EXP)
Nonylphenol  (EXP,ISO)
ochratoxin A  (EXP)
p-tert-Amylphenol  (EXP)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
pirinixic acid  (EXP,ISO)
pravastatin  (EXP,ISO)
progesterone  (ISO)
propylparaben  (EXP)
quercetin  (ISO)
sirolimus  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
sulforaphane  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
tetramethrin  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP,ISO)
triclosan  (EXP)
uranium atom  (EXP)
vancomycin  (ISO)
vinclozolin  (EXP)
zaragozic acid A  (EXP,ISO)
zearalenone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Parabens inhibit the early phase of folliculogenesis and steroidogenesis in the ovaries of neonatal rats. Ahn HJ, etal., Mol Reprod Dev. 2012 Sep;79(9):626-36. doi: 10.1002/mrd.22070. Epub 2012 Jul 26.
2. Molecular cloning of the cDNA and chromosomal gene for vitamin D-dependent calcium-binding protein of rat intestine. Darwish HM, etal., Proc Natl Acad Sci U S A 1987 Sep;84(17):6108-11.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Structure and nucleotide sequence of the rat intestinal vitamin D-dependent calcium binding protein gene. Krisinger J, etal., Proc Natl Acad Sci U S A 1988 Dec;85(23):8988-92.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. The rat vitamin-D-dependent calcium-binding protein (9-kDa CaBP) gene. Complete nucleotide sequence and structural organization. Perret C, etal., Eur J Biochem 1988 Feb 15;172(1):43-51.
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Cytosolic Ca2+ buffers. Schwaller B, Cold Spring Harb Perspect Biol. 2010 Nov;2(11):a004051. doi: 10.1101/cshperspect.a004051. Epub 2010 Oct 13.
12. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:3741407   PMID:6315698   PMID:12205031   PMID:12477932   PMID:14622990   PMID:15489334   PMID:15635152   PMID:16246455   PMID:17410547   PMID:18313836   PMID:21605449   PMID:25674214  


Genomics

Comparative Map Data
S100g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X31,705,853 - 31,708,422 (+)NCBImRatBN7.2
mRatBN7.2 EnsemblX31,705,866 - 31,708,433 (+)Ensembl
Rnor_6.0X33,442,820 - 33,445,714 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX33,443,186 - 33,445,709 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X33,790,619 - 33,793,188 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X52,446,817 - 52,449,342 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X52,500,285 - 52,502,811 (+)NCBI
CeleraX32,019,786 - 32,022,301 (+)NCBICelera
Cytogenetic MapXq14NCBI
S100G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X16,650,158 - 16,654,670 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX16,650,158 - 16,654,670 (+)EnsemblGRCh38hg38GRCh38
GRCh37X16,668,281 - 16,672,793 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X16,578,202 - 16,582,712 (+)NCBINCBI36hg18NCBI36
Build 34X16,427,937 - 16,432,448NCBI
CeleraX20,786,679 - 20,791,190 (+)NCBI
Cytogenetic MapXp22.2NCBI
HuRefX14,422,857 - 14,427,585 (+)NCBIHuRef
CHM1_1X16,698,663 - 16,703,172 (+)NCBICHM1_1
T2T-CHM13v2.0X16,232,624 - 16,237,136 (+)NCBI
S100g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X161,744,988 - 161,747,595 (-)NCBIGRCm39mm39
GRCm39 EnsemblX161,744,988 - 161,747,595 (-)Ensembl
GRCm38X162,961,992 - 162,964,599 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX162,961,992 - 162,964,599 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X159,399,924 - 159,402,531 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X158,306,097 - 158,308,704 (-)NCBImm8
CeleraX146,186,381 - 146,188,986 (-)NCBICelera
Cytogenetic MapXF4NCBI
S100g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555191,622,522 - 1,625,164 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555191,623,695 - 1,625,164 (-)NCBIChiLan1.0ChiLan1.0
S100G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X16,642,211 - 16,645,760 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX16,642,211 - 16,645,760 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X9,272,311 - 9,276,147 (+)NCBIMhudiblu_PPA_v0panPan3
S100G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X12,808,234 - 12,813,696 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX12,808,718 - 12,812,972 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX12,659,893 - 12,664,199 (+)NCBI
ROS_Cfam_1.0X12,771,897 - 12,776,208 (+)NCBI
ROS_Cfam_1.0 EnsemblX12,771,404 - 12,776,325 (+)Ensembl
UMICH_Zoey_3.1X12,839,790 - 12,844,092 (+)NCBI
UNSW_CanFamBas_1.0X12,826,177 - 12,830,481 (+)NCBI
UU_Cfam_GSD_1.0X12,853,701 - 12,858,003 (+)NCBI
S100g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X5,930,101 - 5,934,996 (+)NCBI
SpeTri2.0NW_0049364705,931,158 - 5,934,986 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX13,107,402 - 13,114,213 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X13,107,611 - 13,114,213 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X14,053,102 - 14,059,701 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig CytomapXpNCBI
S100G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X15,082,230 - 15,087,327 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 EnsemblX15,083,524 - 15,087,004 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605616,933,822 - 16,937,577 (+)NCBIVero_WHO_p1.0
S100g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248291,402,443 - 1,403,795 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248291,402,296 - 1,403,794 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
DXWox7  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X31,706,555 - 31,706,768 (+)MAPPERmRatBN7.2
Rnor_6.0X33,443,850 - 33,444,060NCBIRnor6.0
Rnor_5.0X33,791,313 - 33,791,523UniSTSRnor5.0
RGSC_v3.4X52,447,480 - 52,447,693RGDRGSC3.4
RGSC_v3.4X52,447,481 - 52,447,693UniSTSRGSC3.4
RGSC_v3.1X52,500,949 - 52,501,162RGD
CeleraX32,020,450 - 32,020,652UniSTS
RH 3.4 MapX451.3UniSTS
RH 3.4 MapX451.3RGD
RH 2.0 Map21345.6RGD
Cytogenetic MapXq21UniSTS
DXMgh12  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X31,706,553 - 31,706,766 (+)MAPPERmRatBN7.2
Rnor_6.0X33,443,848 - 33,444,058NCBIRnor6.0
Rnor_5.0X33,791,311 - 33,791,521UniSTSRnor5.0
RGSC_v3.4X52,447,478 - 52,447,691RGDRGSC3.4
RGSC_v3.4X52,447,479 - 52,447,691UniSTSRGSC3.4
RGSC_v3.1X52,500,947 - 52,501,160RGD
CeleraX32,020,448 - 32,020,650UniSTS
RH 3.4 MapX443.0UniSTS
RH 3.4 MapX443.0RGD
RH 2.0 Map21334.2RGD
Cytogenetic MapXq21UniSTS
DXWox15  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X31,706,553 - 31,706,766 (+)MAPPERmRatBN7.2
Rnor_6.0X33,443,848 - 33,444,058NCBIRnor6.0
Rnor_5.0X33,791,311 - 33,791,521UniSTSRnor5.0
RGSC_v3.4X52,447,478 - 52,447,691RGDRGSC3.4
RGSC_v3.4X52,447,479 - 52,447,691UniSTSRGSC3.4
RGSC_v3.1X52,500,947 - 52,501,160RGD
CeleraX32,020,448 - 32,020,650UniSTS
RH 3.4 MapX451.3UniSTS
RH 3.4 MapX451.3RGD
RH 2.0 Map21340.6RGD
Cytogenetic MapXq21UniSTS
DXWox38  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X31,706,561 - 31,706,780 (+)MAPPERmRatBN7.2
Rnor_6.0X33,443,856 - 33,444,072NCBIRnor6.0
Rnor_5.0X33,791,319 - 33,791,535UniSTSRnor5.0
RGSC_v3.4X52,447,487 - 52,447,705UniSTSRGSC3.4
CeleraX32,020,456 - 32,020,664UniSTS
Cytogenetic MapXq21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2099094741052531Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2099094741203591Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:27
Interacting mature miRNAs:28
Transcripts:ENSRNOT00000005622
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2
Medium 1 9 6 3 6 8 6 11
Low 3 46 33 14 33 5 5 16 17 6 5
Below cutoff 7 2 2 1 2 3 4 25 4 15 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000005622   ⟹   ENSRNOP00000005622
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX31,705,866 - 31,708,433 (+)Ensembl
Rnor_6.0 EnsemblX33,443,186 - 33,445,709 (+)Ensembl
RefSeq Acc Id: NM_012521   ⟹   NP_036653
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X31,705,892 - 31,708,417 (+)NCBI
Rnor_6.0X33,443,186 - 33,445,709 (+)NCBI
Rnor_5.0X33,790,619 - 33,793,188 (+)NCBI
RGSC_v3.4X52,446,817 - 52,449,342 (+)RGD
CeleraX32,019,786 - 32,022,301 (+)RGD
Sequence:
RefSeq Acc Id: XM_006256888   ⟹   XP_006256950
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X31,705,853 - 31,708,422 (+)NCBI
Rnor_6.0X33,442,820 - 33,445,714 (+)NCBI
Rnor_5.0X33,790,619 - 33,793,188 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_036653   ⟸   NM_012521
- UniProtKB: P02634 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006256950   ⟸   XM_006256888
- Peptide Label: isoform X1
- UniProtKB: P02634 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000005622   ⟸   ENSRNOT00000005622
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P02634-F1-model_v2 AlphaFold P02634 1-79 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701803
Promoter ID:EPDNEW_R12327
Type:single initiation site
Name:S100g_1
Description:S100 calcium binding protein G
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X33,443,186 - 33,443,246EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2253 AgrOrtholog
BioCyc Gene G2FUF-2543 BioCyc
Ensembl Genes ENSRNOG00000004222 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000005622 ENTREZGENE
  ENSRNOP00000005622.4 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005622 ENTREZGENE
  ENSRNOT00000005622.6 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6917928 IMAGE-MGC_LOAD
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot
  EF_hand_dom UniProtKB/Swiss-Prot
  S-100_dom UniProtKB/Swiss-Prot
  S100/CaBP-9k_CS UniProtKB/Swiss-Prot
  S100_Ca-bd_sub UniProtKB/Swiss-Prot
  S100G UniProtKB/Swiss-Prot
KEGG Report rno:24249 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72928 IMAGE-MGC_LOAD
NCBI Gene 24249 ENTREZGENE
PANTHER PTHR11639:SF73 UniProtKB/Swiss-Prot
Pfam EF-hand_1 UniProtKB/Swiss-Prot
  S_100 UniProtKB/Swiss-Prot
PhenoGen S100g PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot
  EF_HAND_2 UniProtKB/Swiss-Prot
  S100_CABP UniProtKB/Swiss-Prot
SMART EFh UniProtKB/Swiss-Prot
  S_100 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot
TIGR TC233052
UniProt A0A8L2Q2C9_RAT UniProtKB/TrEMBL
  P02634 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P51964 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 S100g  S100 calcium binding protein G  Calb3  calbindin 3, (vitamin D-dependent calcium binding protein)  Symbol and Name updated 1299863 APPROVED
2004-09-10 Calb3  calbindin 3, (vitamin D-dependent calcium binding protein)    calbindin 3  Name updated 1299863 APPROVED
2002-11-06 Calb3  calbindin 3    calcium-binding protein, intestinal, vitamin D-dependent (9-kDa CaBP)  Name updated 625702 APPROVED
2002-06-10 Calb3  calcium-binding protein, intestinal, vitamin D-dependent (9-kDa CaBP)      Symbol and Name status set to approved 70586 APPROVED
2001-06-20 Cbpi  Calcium-binding protein, intestinal, vitamin D-dependent (9-kDa CaBP)      Symbol withdrawn, duplicate of Calb3 (RGD:2253) 67952 WITHDRAWN

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in intestine 634681
gene_function calcium-binding protein 634681
gene_process may be involved in calcium metabolism in intestine 634681
gene_protein 79 amino acid protein 634681
gene_regulation transcriptionally regulated by 1,25-dihydroxyvitamin D3 634681