NECTIN4-AS1 (NECTIN4 antisense RNA 1) - Rat Genome Database

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Gene: NECTIN4-AS1 (NECTIN4 antisense RNA 1) Homo sapiens
Analyze
Symbol: NECTIN4-AS1
Name: NECTIN4 antisense RNA 1
RGD ID: 21410097
HGNC Page HGNC:40893
Description: ASSOCIATED WITH Gastrointestinal stroma tumor; gastrointestinal stromal tumor
Type: ncrna
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381161,083,826 - 161,090,732 (+)NCBIGRCh38GRCh38hg38GRCh38
Cytogenetic Map1q23.3NCBI
CHM1_11162,449,851 - 162,453,609 (+)NCBICHM1_1
T2T-CHM13v2.01160,221,304 - 160,228,211 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

Genomics

Variants

.
Variants in NECTIN4-AS1
3 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q21.2-25.2(chr1:149854269-180267197)x3 copy number gain See cases [RCV000143515] Chr1:149854269..180267197 [GRCh38]
Chr1:149825831..180236332 [GRCh37]
Chr1:148092455..178502955 [NCBI36]
Chr1:1q21.2-25.2		 pathogenic
GRCh38/hg38 1q23.2-24.1(chr1:159479887-166895086)x1 copy number loss See cases [RCV000051172] Chr1:159479887..166895086 [GRCh38]
Chr1:159449677..166864323 [GRCh37]
Chr1:157716301..165130947 [NCBI36]
Chr1:1q23.2-24.1		 pathogenic
GRCh38/hg38 1q23.1-25.1(chr1:157747246-176021247)x3 copy number gain See cases [RCV000051854] Chr1:157747246..176021247 [GRCh38]
Chr1:157717036..175990383 [GRCh37]
Chr1:155983660..174257006 [NCBI36]
Chr1:1q23.1-25.1		 pathogenic
NC_000001.10:g.(?_160786670)_(161332233_?)dup duplication Gastrointestinal stromal tumor [RCV000792787] Chr1:160816880..161362443 [GRCh38]
Chr1:160786670..161332233 [GRCh37]
Chr1:1q23.3		 uncertain significance
GRCh38/hg38 1q23.3(chr1:160866658-161315114)x3 copy number gain See cases [RCV000051555] Chr1:160866658..161315114 [GRCh38]
Chr1:160836448..161284904 [GRCh37]
Chr1:159103072..159551528 [NCBI36]
Chr1:1q23.3		 uncertain significance
NM_030916.3(NECTIN4):c.22G>A (p.Glu8Lys) single nucleotide variant not provided [RCV003061057] Chr1:161089275 [GRCh38]
Chr1:161059065 [GRCh37]
Chr1:1q23.3		 uncertain significance
NM_030916.3(NECTIN4):c.21C>T (p.Ala7=) single nucleotide variant not provided [RCV003558885] Chr1:161089276 [GRCh38]
Chr1:161059066 [GRCh37]
Chr1:1q23.3		 likely benign

Expression


Sequence


Reference Sequences
RefSeq Acc Id: NR_183640
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381161,083,826 - 161,090,732 (+)NCBI
T2T-CHM13v2.01160,221,304 - 160,228,211 (+)NCBI
RefSeq Acc Id: NR_183641
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381161,083,826 - 161,090,732 (+)NCBI
T2T-CHM13v2.01160,221,304 - 160,228,211 (+)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC NECTIN4-AS1 COSMIC
GTEx NECTIN4-AS1 GTEx
HGNC ID HGNC:40893 ENTREZGENE
Human Proteome Map NECTIN4-AS1 Human Proteome Map
NCBI Gene NECTIN4-AS1 ENTREZGENE
RNAcentral URS00026A20A4 RNACentral
  URS00026A2841 RNACentral