Acta1 (actin, alpha 1, skeletal muscle) - Rat Genome Database

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Gene: Acta1 (actin, alpha 1, skeletal muscle) Rattus norvegicus
Analyze
Symbol: Acta1
Name: actin, alpha 1, skeletal muscle
RGD ID: 2025
Description: Predicted to enable ATP binding activity. Involved in several processes, including response to lithium ion; response to steroid hormone; and skeletal muscle fiber adaptation. Predicted to be located in several cellular components, including filopodium; lamellipodium; and sarcomere. Predicted to be part of dynactin complex. Predicted to be active in actin filament; stress fiber; and striated muscle thin filament. Human ortholog(s) of this gene implicated in congenital fiber-type disproportion and nemaline myopathy 3. Orthologous to human ACTA1 (actin alpha 1, skeletal muscle); INTERACTS WITH (+)-schisandrin B; (R)-noradrenaline; (S)-nicotine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: actin alpha 1; actin alpha 1 skeletal muscle; actin, alpha skeletal muscle; alpha-actin-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21951,883,713 - 51,886,725 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1951,883,715 - 51,886,742 (-)Ensembl
Rnor_6.01956,674,072 - 56,677,084 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1956,674,074 - 56,677,084 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01967,389,899 - 67,392,911 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41954,081,496 - 54,084,508 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11954,086,370 - 54,089,389 (-)NCBI
Celera1951,258,256 - 51,261,324 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(R)-noradrenaline  (EXP)
(S)-nicotine  (EXP,ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aconitine  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP,ISO)
ammonium chloride  (EXP)
aristolochic acid  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
Benzo[ghi]perylene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
chrysene  (ISO)
copper(II) sulfate  (ISO)
corticosterone  (EXP)
Cuprizon  (EXP)
cyclosporin A  (ISO)
cytarabine  (ISO)
D-glucose  (EXP,ISO)
daunorubicin  (ISO)
deoxynivalenol  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
emodin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
etoposide  (ISO)
flurbiprofen  (ISO)
folic acid  (ISO)
fucoxanthin  (ISO)
furan  (EXP)
genistein  (ISO)
glucose  (EXP,ISO)
graphite  (ISO)
GSK2181236A  (EXP)
hydralazine  (EXP)
hydrochlorothiazide  (EXP)
hydrogen peroxide  (ISO)
isoprenaline  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead nitrate  (ISO)
leflunomide  (ISO)
Licochalcone B  (ISO)
manganese atom  (EXP)
manganese(0)  (EXP)
manganese(II) chloride  (EXP)
metformin  (EXP)
mitoxantrone  (ISO)
Monobutylphthalate  (ISO)
naphthalene  (ISO)
nickel sulfate  (ISO)
nicotine  (EXP,ISO)
nitric oxide  (EXP)
ozone  (ISO)
p-anisidine  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylephrine  (EXP,ISO)
phenylmercury acetate  (ISO)
PhIP  (EXP)
pioglitazone  (ISO)
pirinixic acid  (ISO)
pravastatin  (EXP,ISO)
prazosin  (EXP)
progesterone  (EXP,ISO)
propanal  (ISO)
propofol  (EXP)
prostaglandin E2  (EXP)
quercetin  (ISO)
resveratrol  (EXP,ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium fluoride  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
triazines  (ISO)
Tributyltin oxide  (ISO)
triclosan  (ISO)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
1. Bell D, etal., Am J Physiol Heart Circ Physiol. 2006 Feb;290(2):H904-14. Epub 2005 Jul 22.
2. Bielecki M, etal., Pol Przegl Radiol Med Nukl 1978 Mar-Apr;42(2):91-7.
3. Bonham GS Vital Health Stat 10 1978 Nov;(124):i-iv, 1-57.
4. Costell MH, etal., Front Pharmacol. 2012 Jul 5;3:128. doi: 10.3389/fphar.2012.00128. eCollection 2012.
5. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Juretic N, etal., J Cell Physiol. 2006 Dec 4;.
7. Kashour T, etal., J Mol Cell Cardiol. 2003 Aug;35(8):937-51.
8. Mayer Y, etal., Nucleic Acids Res 1984 Jan 25;12(2):1087-100.
9. MGD data from the GO Consortium
10. NCBI rat LocusLink and RefSeq merged data July 26, 2002
11. OMIM Disease Annotation Pipeline
12. Pikkarainen S, etal., J Biol Chem. 2003 Jun 27;278(26):23807-16. Epub 2003 Apr 17.
13. RGD automated data pipeline
14. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. RGD automated import pipeline for gene-chemical interactions
16. RGD comprehensive gene curation
17. Seo Y, etal., J Biochem (Tokyo). 2006 Jan;139(1):71-80.
18. Sparrow JC, etal., Neuromuscul Disord. 2003 Sep;13(7-8):519-31.
19. Stilli D, etal., Exp Physiol. 2006 May;91(3):571-80. Epub 2006 Feb 1.
20. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
21. Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
22. Tsybouleva N, etal., Circulation. 2004 Mar 16;109(10):1284-91. Epub 2004 Mar 1.
23. Yamashita H, etal., Cardiovasc Res. 2003 Dec 1;60(3):580-8.
24. Zakut R, etal., Nature 1982 Aug 26;298(5877):857-9.
Additional References at PubMed
PMID:1423520   PMID:2731651   PMID:6894330   PMID:11333380   PMID:12849983   PMID:15198992   PMID:15247264   PMID:15489334   PMID:16025302   PMID:16854843   PMID:17487264   PMID:19199708  
PMID:20124353   PMID:20226789   PMID:20455213   PMID:21362503   PMID:22082260   PMID:22516433   PMID:23106098   PMID:23420843   PMID:23533145   PMID:23580065   PMID:24625528  


Genomics

Comparative Map Data
Acta1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21951,883,713 - 51,886,725 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1951,883,715 - 51,886,742 (-)Ensembl
Rnor_6.01956,674,072 - 56,677,084 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1956,674,074 - 56,677,084 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01967,389,899 - 67,392,911 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41954,081,496 - 54,084,508 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11954,086,370 - 54,089,389 (-)NCBI
Celera1951,258,256 - 51,261,324 (-)NCBICelera
Cytogenetic Map19q12NCBI
ACTA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1229,430,365 - 229,434,104 (-)EnsemblGRCh38hg38GRCh38
GRCh381229,431,245 - 229,434,094 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371229,566,992 - 229,569,841 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361227,633,615 - 227,636,466 (-)NCBINCBI36hg18NCBI36
Build 341225,873,729 - 225,876,578NCBI
Celera1202,835,304 - 202,838,155 (-)NCBI
Cytogenetic Map1q42.13NCBI
HuRef1200,057,954 - 200,060,804 (-)NCBIHuRef
CHM1_11230,839,339 - 230,842,183 (-)NCBICHM1_1
Acta1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,618,497 - 124,621,514 (-)NCBIGRCm39mm39
GRCm39 Ensembl8124,618,508 - 124,621,490 (-)Ensembl
GRCm388123,891,758 - 123,894,775 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,891,769 - 123,894,751 (-)EnsemblGRCm38mm10GRCm38
MGSCv378126,415,667 - 126,418,636 (-)NCBIGRCm37mm9NCBIm37
MGSCv368126,777,857 - 126,780,826 (-)NCBImm8
Celera8128,158,816 - 128,161,785 (-)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.26NCBI
Acta1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554928,644,146 - 8,647,523 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554928,644,696 - 8,647,412 (+)NCBIChiLan1.0ChiLan1.0
ACTA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11210,007,622 - 210,010,459 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,007,622 - 210,010,469 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01204,975,646 - 204,978,523 (-)NCBIMhudiblu_PPA_v0panPan3
ACTA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.149,811,726 - 9,814,533 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl49,811,801 - 9,814,530 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha49,802,887 - 9,805,701 (+)NCBI
ROS_Cfam_1.049,842,369 - 9,845,196 (+)NCBI
UMICH_Zoey_3.149,846,012 - 9,848,831 (+)NCBI
UNSW_CanFamBas_1.049,960,597 - 9,963,412 (+)NCBI
UU_Cfam_GSD_1.0410,212,935 - 10,215,761 (+)NCBI
Acta1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934444,071,243 - 44,074,156 (+)NCBI
SpeTri2.0NW_00493648420,236,320 - 20,239,385 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11460,412,651 - 60,415,687 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21465,236,192 - 65,239,197 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACTA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12566,700,448 - 66,703,325 (-)NCBI
ChlSab1.1 Ensembl2566,700,369 - 66,714,891 (-)Ensembl
Vero_WHO_p1.0NW_02366605568,553,718 - 68,559,732 (-)NCBI
Acta1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477519,650,923 - 19,653,707 (+)NCBI

Position Markers
PMC109669P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,199 - 11,666,019 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,931 - 13,718,750NCBIRnor6.0
Rnor_5.01215,747,944 - 15,748,763UniSTSRnor5.0
RGSC_v3.41212,049,158 - 12,049,977UniSTSRGSC3.4
Celera1213,454,531 - 13,455,350UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map19q12UniSTS
PMC156330P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1951,258,498 - 51,259,502UniSTS
Celera1213,454,501 - 13,455,354UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map18p12UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map10q32.3UniSTS
PMC201106P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12p11UniSTS
Cytogenetic Map10q32.3UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map18p12UniSTS
AA959943  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,883,726 - 51,883,919 (+)MAPPERmRatBN7.2
Rnor_6.01956,674,086 - 56,674,278NCBIRnor6.0
Rnor_5.01967,389,913 - 67,390,105UniSTSRnor5.0
RGSC_v3.41954,081,510 - 54,081,702UniSTSRGSC3.4
Celera1951,258,270 - 51,258,462UniSTS
Cytogenetic Map19q12UniSTS
AI704778  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,883,725 - 51,883,943 (+)MAPPERmRatBN7.2
Rnor_6.01956,674,085 - 56,674,302NCBIRnor6.0
Rnor_5.01967,389,912 - 67,390,129UniSTSRnor5.0
RGSC_v3.41954,081,509 - 54,081,726UniSTSRGSC3.4
Celera1951,258,269 - 51,258,486UniSTS
RH 3.4 Map19733.8UniSTS
Cytogenetic Map19q12UniSTS
PMC133768P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,205 - 11,665,364 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,937 - 13,718,095NCBIRnor6.0
Rnor_5.01215,747,950 - 15,748,108UniSTSRnor5.0
RGSC_v3.41212,049,164 - 12,049,322UniSTSRGSC3.4
Celera1213,454,537 - 13,454,695UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map19q12UniSTS
PMC151529P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,884,919 - 51,885,405 (+)MAPPERmRatBN7.2
Rnor_6.01956,675,279 - 56,675,764NCBIRnor6.0
Rnor_5.01967,391,106 - 67,391,591UniSTSRnor5.0
RGSC_v3.41954,082,703 - 54,083,188UniSTSRGSC3.4
Celera1951,259,519 - 51,260,004UniSTS
Cytogenetic Map19q12UniSTS
PMC156124P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12p11UniSTS
Cytogenetic Map10q32.3UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map18p12UniSTS
PMC133998P8  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,403 - 11,665,406 (+)MAPPERmRatBN7.2
mRatBN7.21951,884,568 - 51,885,392 (+)MAPPERmRatBN7.2
Rnor_6.01956,674,928 - 56,675,751NCBIRnor6.0
Rnor_6.01213,717,135 - 13,718,137NCBIRnor6.0
Rnor_5.01967,390,755 - 67,391,578UniSTSRnor5.0
Rnor_5.01215,747,148 - 15,748,150UniSTSRnor5.0
RGSC_v3.41954,082,352 - 54,083,175UniSTSRGSC3.4
RGSC_v3.41212,048,362 - 12,049,364UniSTSRGSC3.4
Celera1213,453,735 - 13,454,737UniSTS
Celera1951,259,168 - 51,259,991UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map19q12UniSTS
LOC345651  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,470 - 11,665,066 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,202 - 13,717,797NCBIRnor6.0
Rnor_5.01215,747,215 - 15,747,810UniSTSRnor5.0
RGSC_v3.41212,048,429 - 12,049,024UniSTSRGSC3.4
Celera1213,453,802 - 13,454,397UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map3q35UniSTS
PMC209527P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,359 - 11,665,325 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,091 - 13,718,056NCBIRnor6.0
Rnor_5.01215,747,104 - 15,748,069UniSTSRnor5.0
RGSC_v3.41212,048,318 - 12,049,283UniSTSRGSC3.4
Celera1213,453,691 - 13,454,656UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map19q12UniSTS
PMC87052P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,379 - 11,666,026 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,111 - 13,718,757NCBIRnor6.0
Rnor_5.01215,748,124 - 15,748,770UniSTSRnor5.0
RGSC_v3.41212,049,338 - 12,049,984UniSTSRGSC3.4
Celera1213,454,711 - 13,455,357UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:173
Count of miRNA genes:127
Interacting mature miRNAs:138
Transcripts:ENSRNOT00000024084
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 30 8 11 8
Medium 3 13 18 10 12 10 31 2 23 8
Low 21 13 7 13 43 27 18 3
Below cutoff 16 16 16 6

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_019212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC133405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  V01218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  V01224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000024084   ⟹   ENSRNOP00000024084
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,883,715 - 51,886,742 (-)Ensembl
Rnor_6.0 Ensembl1956,674,074 - 56,677,084 (-)Ensembl
RefSeq Acc Id: NM_019212   ⟹   NP_062085
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21951,883,713 - 51,886,725 (-)NCBI
Rnor_6.01956,674,072 - 56,677,084 (-)NCBI
Rnor_5.01967,389,899 - 67,392,911 (-)NCBI
RGSC_v3.41954,081,496 - 54,084,508 (-)RGD
Celera1951,258,256 - 51,261,324 (-)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: NP_062085   ⟸   NM_019212
- UniProtKB: P68136 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000024084   ⟸   ENSRNOT00000024084

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701230
Promoter ID:EPDNEW_R11754
Type:multiple initiation site
Name:Acta1_1
Description:actin, alpha 1, skeletal muscle
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01956,677,093 - 56,677,153EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program