VMP1 (vacuole membrane protein 1) - Rat Genome Database

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Gene: VMP1 (vacuole membrane protein 1) Sus scrofa
Analyze
Symbol: VMP1
Name: vacuole membrane protein 1
RGD ID: 19833468
Description: ENCODES a protein that exhibits phospholipid scramblase activity (inferred); INVOLVED IN autophagosome assembly (inferred); autophagosome membrane docking (inferred); autophagy (inferred); FOUND IN cytoplasm (inferred); endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred)
Type: protein-coding
Latest Assembly: Sscrofa11.1 Ensembl - Pig Sscrofa11.1 Assembly Ensembl
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1235,933,173 - 36,065,956 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 3 5 1 23 2 3 3
Low 2 1
Below cutoff

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSSSCT00000019232   ⟹   ENSSSCP00000018722
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1235,952,990 - 36,065,956 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000037100   ⟹   ENSSSCP00000039810
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1235,933,296 - 36,064,640 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000039134   ⟹   ENSSSCP00000049775
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1235,933,173 - 36,064,267 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000045181   ⟹   ENSSSCP00000050810
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1235,952,990 - 36,063,022 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000054472   ⟹   ENSSSCP00000036236
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1235,933,296 - 36,064,640 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000067573   ⟹   ENSSSCP00000068507
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1235,933,192 - 36,064,267 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000069412   ⟹   ENSSSCP00000070387
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1235,933,345 - 36,062,463 (+)Ensembl
Protein Sequences
Ensembl Protein ENSSSCP00000018722.4
  ENSSSCP00000039810.3
  ENSSSCP00000049775.3
  ENSSSCP00000050810.2
  ENSSSCP00000068507.1
  ENSSSCP00005009737.1
Reference Protein Sequences
RefSeq Acc Id: ENSSSCP00000036236   ⟸   ENSSSCT00000054472
RefSeq Acc Id: ENSSSCP00000049775   ⟸   ENSSSCT00000039134
RefSeq Acc Id: ENSSSCP00000018722   ⟸   ENSSSCT00000019232
RefSeq Acc Id: ENSSSCP00000050810   ⟸   ENSSSCT00000045181
RefSeq Acc Id: ENSSSCP00000070387   ⟸   ENSSSCT00000069412
RefSeq Acc Id: ENSSSCP00000039810   ⟸   ENSSSCT00000037100
RefSeq Acc Id: ENSSSCP00000068507   ⟸   ENSSSCT00000067573
Protein Domains
VTT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017668 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00005010408 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019232.6 UniProtKB/TrEMBL
  ENSSSCT00000037100.3 UniProtKB/TrEMBL
  ENSSSCT00000039134.3 UniProtKB/TrEMBL
  ENSSSCT00000045181.3 UniProtKB/TrEMBL
  ENSSSCT00000067573.2 UniProtKB/TrEMBL
  ENSSSCT00005016307.1 UniProtKB/TrEMBL
InterPro VTT_dom UniProtKB/TrEMBL
PANTHER MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED UniProtKB/TrEMBL
  VACUOLE MEMBRANE PROTEIN 1 UniProtKB/TrEMBL
Pfam SNARE_assoc UniProtKB/TrEMBL
UniProt A0A287A7R3_PIG UniProtKB/TrEMBL
  A0A287B042_PIG UniProtKB/TrEMBL
  A0A287B3W1_PIG UniProtKB/TrEMBL
  A0A8D1NWH5_PIG UniProtKB/TrEMBL
  F1S226_PIG UniProtKB/TrEMBL
UniProt Secondary A0A5G2R2T0 UniProtKB/TrEMBL