ZNF543 (zinc finger protein 543) - Rat Genome Database

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Gene: ZNF543 (zinc finger protein 543) Canis lupus familiaris
Analyze
Symbol: ZNF543
Name: zinc finger protein 543
RGD ID: 19261318
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); RNA polymerase II transcription regulatory region sequence-specific DNA binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); urogenital system development (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
Latest Assembly: CanFam3.1 Ensembl - Dog CanFam3.1 Assembly Ensembl
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1100,811,980 - 100,865,976 (-)EnsemblCanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 10 6 8
Low 5 5 12 6 6 6 6 6 6 8 2 6
Below cutoff

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSCAFT00000048638   ⟹   ENSCAFP00000037096
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1100,851,220 - 100,864,892 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000059588   ⟹   ENSCAFP00000059790
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1100,811,980 - 100,865,976 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000068618   ⟹   ENSCAFP00000058785
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1100,811,980 - 100,865,976 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000077887   ⟹   ENSCAFP00000049837
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1100,811,980 - 100,864,892 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000080111   ⟹   ENSCAFP00000045451
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1100,811,980 - 100,830,297 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000080624   ⟹   ENSCAFP00000066067
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1100,812,225 - 100,864,892 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000083480   ⟹   ENSCAFP00000058930
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1100,811,980 - 100,829,599 (-)Ensembl
Protein Sequences
Ensembl Protein ENSCAFP00000066067.2
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000059790   ⟸   ENSCAFT00000059588
RefSeq Acc Id: ENSCAFP00000045451   ⟸   ENSCAFT00000080111
RefSeq Acc Id: ENSCAFP00000049837   ⟸   ENSCAFT00000077887
RefSeq Acc Id: ENSCAFP00000037096   ⟸   ENSCAFT00000048638
RefSeq Acc Id: ENSCAFP00000058930   ⟸   ENSCAFT00000083480
RefSeq Acc Id: ENSCAFP00000058785   ⟸   ENSCAFT00000068618
RefSeq Acc Id: ENSCAFP00000066067   ⟸   ENSCAFT00000080624
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000030732 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000080624.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
PANTHER ODD-SKIPPED - RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 208-LIKE UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
UniProt A0A8P0PEJ2_CANLF UniProtKB/TrEMBL