ZSCAN23 (zinc finger and SCAN domain containing 23) - Rat Genome Database

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Gene: ZSCAN23 (zinc finger and SCAN domain containing 23) Canis lupus familiaris
Analyze
Symbol: ZSCAN23
Name: zinc finger and SCAN domain containing 23
RGD ID: 19260181
Description: FOUND IN nucleus (inferred)
Type: protein-coding
Latest Assembly: CanFam3.1 Ensembl - Dog CanFam3.1 Assembly Ensembl
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3525,541,092 - 25,550,770 (-)EnsemblCanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 5 5 22 6 6 6 6 1 12 8 10 6
Below cutoff 5

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSCAFT00000018913   ⟹   ENSCAFP00000017525
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3525,544,732 - 25,550,770 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000067898   ⟹   ENSCAFP00000048098
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3525,542,432 - 25,550,770 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000071751   ⟹   ENSCAFP00000066414
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3525,541,092 - 25,550,770 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000082819   ⟹   ENSCAFP00000061206
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3525,544,979 - 25,550,770 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000093099   ⟹   ENSCAFP00000063276
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3525,546,306 - 25,550,770 (-)Ensembl
Protein Sequences
Ensembl Protein ENSCAFP00000048098.2
  ENSCAFP00000061206.1
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000048098   ⟸   ENSCAFT00000067898
RefSeq Acc Id: ENSCAFP00000017525   ⟸   ENSCAFT00000018913
RefSeq Acc Id: ENSCAFP00000063276   ⟸   ENSCAFT00000093099
RefSeq Acc Id: ENSCAFP00000061206   ⟸   ENSCAFT00000082819
RefSeq Acc Id: ENSCAFP00000066414   ⟸   ENSCAFT00000071751
Protein Domains
C2H2-type   SCAN box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000024985 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000067898.2 UniProtKB/TrEMBL
  ENSCAFT00000082819.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
PANTHER PROTEIN ZBED8-RELATED UniProtKB/TrEMBL
  SCAN DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
Pfam SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8P0T108_CANLF UniProtKB/TrEMBL
  A0A8P0TCY2_CANLF UniProtKB/TrEMBL